PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P03610_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

GRAS

Protein Properties

Length: 144aa MW: 16495.9 Da PI: 8.6542

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P03610_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	186.2	2.2e-57	1	143	230	373
GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWre 317 +vk+lsP+v ++veqe+++n++sFl+rf+e+leyysa+++s++a+lpr+s+eri+vE+++l+++ivn++aceg+er+erhe l+kWr+ GSMUA_Achr8P03610_001 1 MVKGLSPRVTTLVEQESNTNTTSFLTRFMETLEYYSAMLESIDATLPRDSKERINVEQHCLAKDIVNIIACEGKERVERHELLGKWRS 88 69************************************************************************************ PP GRAS 318 rleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 rl++aGFkp+pls+++++ +k+ll ++ d y++ e++g+++lgWk+r+L+s+SaW GSMUA_Achr8P03610_001 89 RLSMAGFKPYPLSSYVNSVIKTLLGYYS-DKYTLVEKDGAMLLGWKNRNLISASAW 143 ********************9999.55*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	7.7E-55	1	143	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	28.287	1	125	IPR005202	Transcription factor GRAS
Gene3D	G3DSA:1.20.1250.10	0.001	11	63	IPR012351	Four-helical cytokine, core

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MVKGLSPRVT TLVEQESNTN TTSFLTRFME TLEYYSAMLE SIDATLPRDS KERINVEQHC 60 LAKDIVNIIA CEGKERVERH ELLGKWRSRL SMAGFKPYPL SSYVNSVIKT LLGYYSDKYT 120 LVEKDGAMLL GWKNRNLISA SAWH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-27	1	143	237	378	Protein SCARECROW
5b3h_A	2e-27	1	143	236	377	Protein SCARECROW
5b3h_D	2e-27	1	143	236	377	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269\|PubMed:12591613}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269\|PubMed:12591613}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009412448.1	2e-99	PREDICTED: chitin-inducible gibberellin-responsive protein 1-like
Swissprot	Q69VG1	5e-85	CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBL	M0TMB3	1e-103	M0TMB3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P03610_001	1e-104	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP51499	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	3e-76	GRAS family protein

Publications ? help Back to Top
Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627]