PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P03800_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family B3
Protein Properties Length: 817aa    MW: 90827 Da    PI: 8.5049
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P03800_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.43e-19352452199
                            EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                            f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d sg+ W +++++  +++s++yvl+ G     +a +L++gD+v+F++
  GSMUA_Achr8P03800_001 352 FEKMLSASDAGRIGRLVLPKKCAEAYfpTISQPEGLPLKVQDASGKDWVFQFRFwpNNNSRMYVLE-GVTPCIQAMQLQAGDTVTFSR 438
                            89**************************555567778***************9989999999***9.********************9 PP

                            -SSSEE..EEEEE-S CS
                     B3  85 dgrsefelvvkvfrk 99 
                            ++  e++lv++++++
  GSMUA_Achr8P03800_001 439 ID-PEGKLVMGFRKA 452
                            87.777788777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.37E-20349452IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.8E-30349454IPR015300DNA-binding pseudobarrel domain
CDDcd100172.91E-22350451No hitNo description
PROSITE profilePS5086311.321352453IPR003340B3 DNA binding domain
PfamPF023623.1E-16352451IPR003340B3 DNA binding domain
SMARTSM010192.0E-21352453IPR003340B3 DNA binding domain
PROSITE profilePS5105013.434577627IPR011124Zinc finger, CW-type
PfamPF074963.2E-10582624IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 817 aa     Download sequence    Send to blast
MSSPTSVSLS GGKICFNSHC KEVILDHTPP RKKGGWRLRS GEIAELCDRC SCAFEQGSFC  60
ETFHSDVAGW RNCEACGKRV HCGCVASAPT YVFLDVGGVE CIACARKSLA MAPNQMLSSP  120
MLMHQHVSER RDLPVKSGRP ITSPFSGQWR QAPHMWNMTS LQSDLQQRLS YEFDRPSNIE  180
KLAPGGRHSI SAHEKKFEEL PERIMSGSHN NIARDRYAHG NTVIPDPCST SSGVKIEAKA  240
NSSIKLQPLP ISKEDSSPLI GLAAPFSSTN GSREPMKFLS NQPPQLTTSP LPKQFYPEGI  300
ADTELQIQMR NGRARVDARS RTQLLPRYWP RITDQELQQI SGDTNSVITP LFEKMLSASD  360
AGRIGRLVLP KKCAEAYFPT ISQPEGLPLK VQDASGKDWV FQFRFWPNNN SRMYVLEGVT  420
PCIQAMQLQA GDTVTFSRID PEGKLVMGFR KASSGSTEQD TQTHISGSDF STPPEADKSS  480
WPKFTKAGFI QQDGPAARSL QVPSKRKAST LGSKSKRLRI ENEESMELKL TWEEAQELLR  540
PPPNSSPGIV VIEGHEFEEY EEAPVLGKRT YFTTNPAGEN YQWAQCEDCL KWRKLPIDAL  600
LPFKWTCTEN VSDPQRSSCS SAQELNLEQI AAMISCKTDA SKRAKVKVES NNIEVSDGLD  660
TLANLAILGE GKNLPTSQPT TRHPRHRPGC TCIVCIQPPS GKGPKHKQTC TCNVCLTVKR  720
RFRTLMLRRE KRQSEKESET ARKQQQKPML PSSEVLPQVK SDPSSTGPGD DNASQKEIAS  780
NDTIKGNYTN KQVVILPSLS SYPETLSLVS FVFYYYW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-643304592131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1718731KRRFRTLMLRREKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412434.10.0PREDICTED: B3 domain-containing protein Os07g0563300-like isoform X4
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLM0TMD30.0M0TMD3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P03800_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1