PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P04750_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family YABBY
Protein Properties Length: 163aa    MW: 18253.9 Da    PI: 8.5975
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P04750_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY169.52.3e-5251555170
                  YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasq.llaaeshldeslkeelleelkveeenlksnvekees 91 
                              +eqvCyv+C+fCnt l+v+vP + +++vv+vrC  C++llsvnl +a    l+ +s             l++++++++ + +  es
  GSMUA_Achr8P04750_001   5 VLPEQVCYVNCSFCNTTLLVNVPGSNSSNVVAVRCELCANLLSVNLLEALLgKLPLQS-------------LQNHNTATRHHRMDCES 79 
                            579****************************************999776540333333.............33333333333333333 PP

                  YABBY  92 astsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                            +s  +s +    n+ ++v+++ + i+P ekr rvPsaynrfikeei+r+k++nP+ish+eafs+aaknWahfP+ih gl
  GSMUA_Achr8P04750_001  80 SSICTSLSA--MNSVDHVQQQMQLIQPTEKR-RVPSAYNRFIKEEIRRLKTKNPNISHKEAFSTAAKNWAHFPEIHCGL 155
                            333333322..34444555556789*****9.9*******************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.5E-577155IPR006780YABBY protein
SuperFamilySSF470956.81E-897149IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.6E-5104150IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MSDHVLPEQV CYVNCSFCNT TLLVNVPGSN SSNVVAVRCE LCANLLSVNL LEALLGKLPL  60
QSLQNHNTAT RHHRMDCESS SICTSLSAMN SVDHVQQQMQ LIQPTEKRRV PSAYNRFIKE  120
EIRRLKTKNP NISHKEAFST AAKNWAHFPE IHCGLSIKGN KQV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT7952311e-154KT795231.1 Musa basjoo isolate 71 YABBY2 (YABBY2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018686402.11e-118PREDICTED: putative axial regulator YABBY 2
SwissprotQ10FZ73e-47YAB2_ORYSJ; Protein YABBY 2
TrEMBLM0TMM81e-117M0TMM8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P04750_0011e-118(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.16e-38YABBY family protein