PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P05110_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HB-other

Protein Properties

Length: 309aa MW: 34826.3 Da PI: 4.5834

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P05110_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.4	7.7e-06	246	268	33	55
HHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 33 LAkklgLterqVkvWFqNrRake 55 LA+++gL+ +q+ +WF N+R ++ GSMUA_Achr8P05110_001 246 LAESTGLDMKQIDNWFINQRKRH 268 9*******************885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	5.1E-9	77	121	IPR005540	KNOX1
Pfam	PF03790	1.1E-16	78	120	IPR005540	KNOX1
SMART	SM01256	6.0E-22	128	179	IPR005541	KNOX2
Pfam	PF03791	7.4E-20	134	177	IPR005541	KNOX2
SuperFamily	SSF46689	2.1E-11	232	282	IPR009057	Homeodomain-like
CDD	cd00086	1.27E-8	232	272	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.3E-14	232	273	IPR009057	Homeodomain-like
Pfam	PF05920	1.4E-9	234	267	IPR008422	Homeobox KN domain
PROSITE profile	PS50071	9.086	246	271	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MEEFPSREAI RGEVCCSPLP LRPDKVAAAD AMVATPSTAY CNPINSFLIS DHHENPNLLQ 60 PKPQGASTSR IPQGDDHAIK AKIISHPQCS SLVSAYVECQ KEHIISMVAS RLSAVAQEFD 120 MRLRASLICR DAAPDSELDQ FMEACHDMLV KYEEELSRPL QEAMAFLRSV ESQLNSISVD 180 GGSLPITSNV YRCVFSLVWL PEEKPRAEAS SSDEVWWMLE QPPARALGEE EEDWWELHYK 240 WPYPSLAEST GLDMKQIDNW FINQRKRHWK PSEEMQFVVM DGFQGPSAAA ASLYMDGHFN 300 GDGLYRLGF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates genes involved in development. May be involved in shoot formation during embryogenesis. Overexpression in transgenic plants causes altered leaf morphology (PubMed:10488233, PubMed:8755613, PubMed:9869405). Regulates anther dehiscence via direct repression of the auxin biosynthetic gene YUCCA4 (PubMed:29915329). Binds to the DNA sequence 5'-TGAC-3' in the promoter of the YUCCA4 gene and represses its activity during anther development (PubMed:29915329). Reduction of auxin levels at late stage of anther development, after meiosis of microspore mother cells, is necessary for normal anther dehiscence and seed setting (PubMed:29915329). {ECO:0000269\|PubMed:10488233, ECO:0000269\|PubMed:29915329, ECO:0000269\|PubMed:8755613, ECO:0000269\|PubMed:9869405}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018678907.1	1e-109	PREDICTED: homeobox protein knotted-1-like 6
Swissprot	P46609	4e-75	KNOS6_ORYSJ; Homeobox protein knotted-1-like 6
TrEMBL	M0TMR4	0.0	M0TMR4_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P05110_001	0.0	(Musa acuminata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08150.1	1e-66	KNOTTED-like from Arabidopsis thaliana

Publications ? help Back to Top
Song S, et al. OsFTIP7 determines auxin-mediated anther dehiscence in rice. Nat Plants, 2018. 4(7): p. 495-504 [PMID:29915329]