PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P05170_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 201aa    MW: 22137.6 Da    PI: 9.5642
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P05170_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-122471355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           + h ++Er+RR+++ ++f  L  ++P +     kK +Ka++L  AveY+k Lq
  GSMUA_Achr8P05170_001 24 QEHIMAERKRREKLSQRFIALSAVVPGL-----KKTDKASVLGDAVEYLKRLQ 71
                           689*************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.4152170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-172493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-172485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-102471IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.99E-122675No hitNo description
SMARTSM003532.2E-142776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MEALILGQGA KKVSTGAKPA AQNQEHIMAE RKRREKLSQR FIALSAVVPG LKKTDKASVL  60
GDAVEYLKRL QEKVKSLEDR VSKRNVEAAV LVKRSQLCAD DDDGSPGDES FIEGQGGQSL  120
PEIEARVCEK AILIKIHCEN RKGVLVKALS EIETLHLRVM NTSVVPFSGS SLDITVMEEG  180
FSMTAKDLVK KLNSAFRQFM R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-142674957Transcription factor MYC2
5gnj_B4e-142674957Transcription factor MYC2
5gnj_E4e-142674957Transcription factor MYC2
5gnj_F4e-142674957Transcription factor MYC2
5gnj_G4e-142674957Transcription factor MYC2
5gnj_I4e-142674957Transcription factor MYC2
5gnj_M4e-142674957Transcription factor MYC2
5gnj_N4e-142674957Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12934ERKRRE
23035RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412275.11e-141PREDICTED: transcription factor bHLH18-like
SwissprotQ9T0722e-54BH025_ARATH; Transcription factor bHLH25
TrEMBLM0TMS01e-143M0TMS0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P05170_0011e-144(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-57bHLH family protein