PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P05300_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NF-YB

Protein Properties

Length: 153aa MW: 15754.4 Da PI: 7.6011

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P05300_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	78.4	9.7e-25	25	68	2	45
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisf 45 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf GSMUA_Achr8P05300_001 25 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISF 68 89*****************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.6E-22	22	68	IPR009072	Histone-fold
SuperFamily	SSF47113	1.1E-18	27	97	IPR009072	Histone-fold
Pfam	PF00808	2.2E-14	30	68	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MVDSDNESGG PNNAAGSGGE FSSPREQDRF LPIANVSRIM KKALPANAKI SKDAKETVQE 60 CVSEFISFDY VEPLKVYLQR FREMEGEKMG ASSGSHKEAG GAGVGMYGGG GAMYGSPTSA 120 TSYHHQMSMG GKGSSAGGAG GSSSAGFGRQ GRV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	5e-24	19	83	1	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU956383	4e-53	EU956383.1 Zea mays clone 1561739 nuclear transcription factor Y subunit B-3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009412257.1	7e-70	PREDICTED: nuclear transcription factor Y subunit B-10-like
Swissprot	Q75IZ7	2e-43	NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8
TrEMBL	M0TMT3	1e-105	M0TMT3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P05300_001	1e-106	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18750	5	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47640.1	2e-36	nuclear factor Y, subunit B2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]