PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P07450_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 133aa MW: 15580.9 Da PI: 9.2774

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P07450_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00082	43	66	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C++Cg + s k + ++H+ t H GSMUA_Achr8P07450_001 43 YYCQYCGICRSKKNLIRSHMLTnH 66 89******************9988 PP
2	zf-C2H2	26.1	2.2e-08	90	112	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cg sF+ + +Lk+H+++H GSMUA_Achr8P07450_001 90 YTCKECGASFRKPAHLKQHMQSH 112 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	21	43	66	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.67E-8	87	124	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.2E-8	88	122	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	1.2E-4	90	112	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	12.84	90	117	IPR007087	Zinc finger, C2H2
Pfam	PF00096	1.9E-6	90	112	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	92	112	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MKYMYKCRVM VSAGSCSSGD EMTNNNEGAD AMKKPPKRDI RRYYCQYCGI CRSKKNLIRS 60 HMLTNHKFEL EDAQSDEVEG INKVDRMKRY TCKECGASFR KPAHLKQHMQ SHSVEHWIPC 120 NELQNAKRLH YLS

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269\|PubMed:12711688, ECO:0000269\|PubMed:22353599}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009411993.1	3e-71	PREDICTED: transcription factor IIIA
Swissprot	Q84MZ4	3e-23	TF3A_ARATH; Transcription factor IIIA
TrEMBL	M0TNE8	4e-96	M0TNE8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P07450_001	6e-97	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17974	8	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-25	transcription factor IIIA