PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P07750_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NF-YB
Protein Properties Length: 142aa    MW: 15723.7 Da    PI: 5.1278
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P07750_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB513.6e-1612108694
                  NF-YB   6 rflPianvsrimkkvlPana........kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 
                            ++lP a v r++k  l + a         + kda     e    fi +v++ a+d c++ kr+tin+dd+l al ++ f ++veplkv
  GSMUA_Achr8P07750_001  12 EELPKAIVRRVVKDKLSQLAsggeeedvSVQKDALLAFSESTRIFIHYVSATANDICKESKRQTINADDVLKALEEIDFPEFVEPLKV 99 
                            67999999999999887654111222115678888888899999******************************************** PP

                  NF-YB  86 ylkkyrele 94 
                             l+ +r  +
  GSMUA_Achr8P07750_001 100 ALEDFRTKN 108
                            *****9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.1E-349134IPR009072Histone-fold
PfamPF008082.1E-101385IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.47E-2614135IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MTIKKAPRAE VEELPKAIVR RVVKDKLSQL ASGGEEEDVS VQKDALLAFS ESTRIFIHYV  60
SATANDICKE SKRQTINADD VLKALEEIDF PEFVEPLKVA LEDFRTKNAV KKSGSKGRQT  120
KKRKVDELST QNGEDGGDGS DD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009411949.11e-98PREDICTED: DNA polymerase epsilon subunit 3
TrEMBLM0TNH84e-97M0TNH8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P07750_0017e-98(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104143744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.11e-43nuclear factor Y, subunit B11