PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P08000_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 391aa    MW: 42104 Da    PI: 9.3377
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P08000_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.32.8e-21143192255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f taeeAa+a+++a+++++g
  GSMUA_Achr8P08000_001 143 KYRGVRQRP-WGKWAAEIRDPY----KaARVWLGTFETAEEAARAYDEAALRFRG 192
                            8********.**********76....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.5E-33142186IPR001471AP2/ERF domain
CDDcd000188.95E-34143202No hitNo description
PROSITE profilePS5103225.594143200IPR001471AP2/ERF domain
PfamPF008472.6E-14143192IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-23143201IPR016177DNA-binding domain
SMARTSM003803.0E-38143206IPR001471AP2/ERF domain
PRINTSPR003674.3E-12144155IPR001471AP2/ERF domain
PRINTSPR003674.3E-12166182IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.70.3304.9E-12187202IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549281.88E-14329381IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3304.9E-12334381IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010210.207335383IPR000504RNA recognition motif domain
PfamPF000762.8E-7337380IPR000504RNA recognition motif domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0000166Molecular Functionnucleotide binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MCLKVANPHQ SSDGSFAAAG SDEMEEDAAA AAGMMYSSVT AQAALLSGHR RSRETSTMVS  60
ALTRVMAGEQ RPRPVPMAVD SMSAVSSSSS FSYIFSPPPS YSSPSTAFLP MLQSPAPAAA  120
AVEEASPASS NQEERERAAP KRKYRGVRQR PWGKWAAEIR DPYKAARVWL GTFETAEEAA  180
RAYDEAALRF RGSRAKLNFP ENVRLQPSHS VALAAQVPPS NSPATSSGAV SDYLAYSRLL  240
QGASEYQRLP PASLLDPFVH SGVNDSSSLP ASSFHANSVP SSTVISPSSS SSSSYPPSYA  300
SSTPTERQMI WGGASGFPET SWTHSSQFPP KGPENCLRIS GMPLKVTERD VYEFFSQAGK  360
VRDVRLIMDR NSRRSKGVGY ASVVYFFQIL Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-24139203166ATERF1
3gcc_A2e-24139203166ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018685072.11e-133PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X2
TrEMBLM0TNK30.0M0TNK3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P08000_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-27ethylene response factor 110