PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P09110_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family AP2
Protein Properties Length: 594aa    MW: 64147.8 Da    PI: 7.0767
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P09110_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.83.5e-15249308155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  GSMUA_Achr8P09110_001 249 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 308
                            57*******************666664478446*************************98 PP
2AP2476.5e-15351402155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  GSMUA_Achr8P09110_001 351 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 402
                            57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.21E-22249318No hitNo description
SuperFamilySSF541711.77E-17249318IPR016177DNA-binding domain
PfamPF008474.7E-12249308IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-16250317IPR001471AP2/ERF domain
PROSITE profilePS5103219.23250316IPR001471AP2/ERF domain
SMARTSM003801.2E-29250322IPR001471AP2/ERF domain
PRINTSPR003672.8E-6251262IPR001471AP2/ERF domain
CDDcd000183.97E-24351412No hitNo description
SuperFamilySSF541718.5E-18351412IPR016177DNA-binding domain
PfamPF008478.0E-10351402IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-18352411IPR001471AP2/ERF domain
SMARTSM003801.5E-33352416IPR001471AP2/ERF domain
PROSITE profilePS5103219.045352410IPR001471AP2/ERF domain
PRINTSPR003672.8E-6392412IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MNNWLAFSLS PQELPPSQSH QSNSPSAAVS HLISGDDVSA SCYGLSADST SEPPMGIPTL  60
RPDVPFGVLE AFNRPYHQTQ DWNMKCLDFK GGSSELSMLV GSSSTNQSNM VEDQPKLEDF  120
LGGNSFSDHD HKVLPAGLSG AYSSSGDEYI NSIGLSMIKT WLRNQPNIPQ QQASINSSND  180
MAGGLSLSMS TGSQSSSALP LLAAGPSGGG ESSSSDNKQK GIGGSLDAQT GAMEAVSRKS  240
VDTFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQTRK GRQVYLGGYD KEEKAARAYD  300
LAALKYWGPT TTTNFPISNY EKELEEMKHM TRQEFVASLR RKSSGFSRGA SIYRGVTRHH  360
QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD MSRYDVKSIL  420
ESNTLPIGGA AKRLKDVAEH AEASVNGRGA ADHHHLASQF DGISGYGSLR HHGWPAIAFH  480
QPQPLGVQYP YGLPRGCTES SSVVYNGNMA SSSGSYQGGY VMPMSTVVTD QSHTANRGSC  540
GATFVDDEGK QIGYDSSLNA YYLSQQLSSA MASRSNTMAA AGHAAPLFTV WNDA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009411811.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM2
SwissprotQ8LSN21e-149BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLM0TNW40.0M0TNW4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P09110_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-131AP2 family protein