PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P09250_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family M-type_MADS
Protein Properties Length: 126aa    MW: 14306.7 Da    PI: 11.3652
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P09250_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.53.1e-271160251
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           rien + rqv fskRr g++KKA+EL vLCdaeva+++fs+ gklye+ss
  GSMUA_Achr8P09250_001 11 RIENRISRQVRFSKRRGGLFKKAYELAVLCDAEVALVVFSPAGKLYEFSS 60
                           8***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.973262IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-33261IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.14E-26460IPR002100Transcription factor, MADS-box
CDDcd002652.02E-34460No hitNo description
PRINTSPR004046.8E-29424IPR002100Transcription factor, MADS-box
PfamPF003191.8E-261158IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-292439IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-293960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MAPRGRVELR RIENRISRQV RFSKRRGGLF KKAYELAVLC DAEVALVVFS PAGKLYEFSS  60
VLRRQGGRTR LPMRERERGL SVFWGRSNTA AFFSLSVDCI VVDSDLPYHF SGMCTAVLFV  120
VSRKTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A6e-16461259Myocyte-specific enhancer factor 2A
3mu6_B6e-16461259Myocyte-specific enhancer factor 2A
3mu6_C6e-16461259Myocyte-specific enhancer factor 2A
3mu6_D6e-16461259Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009411797.12e-37PREDICTED: truncated transcription factor CAULIFLOWER A-like
TrEMBLM0TNX82e-85M0TNX8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P09250_0013e-86(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.14e-27AGAMOUS-like 6