PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P09700_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family LBD
Protein Properties Length: 204aa    MW: 22307.3 Da    PI: 4.9768
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P09700_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.22.4e-42411401100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            +CaaCk+lrr+Ca++Cvlapyfp ++p kf  +h++FGasn++kll++lpe++r d++ss+vyeA+ar+rdPvyG++g + +lq+q++
  GSMUA_Achr8P09700_001  41 PCAACKILRRRCADNCVLAPYFPPTEPLKFTTAHRVFGASNIIKLLQDLPENQRADTVSSMVYEAKARIRDPVYGCTGAVCQLQKQVD 128
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallkee 100
                            +l+a+la++k+e
  GSMUA_Achr8P09700_001 129 ELQAQLARAKAE 140
                            *******99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.16240141IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-4241138IPR004883Lateral organ boundaries, LOB
Gene3DG3DSA:1.20.58.604.8E-493166No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MDSSDTTTTG FHHVSSSPET SPFSATPSLP ATPTTVVIHS PCAACKILRR RCADNCVLAP  60
YFPPTEPLKF TTAHRVFGAS NIIKLLQDLP ENQRADTVSS MVYEAKARIR DPVYGCTGAV  120
CQLQKQVDEL QAQLARAKAE LTNLQAQHGN LLALICMEMA RTQQDCTPQS VDDALAASPC  180
MFQSDADFLD EISQGLVWDE PHWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-44311411111LOB family transfactor Ramosa2.1
5ly0_B5e-44311411111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009411741.11e-151PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR01e-63LBD1_ARATH; LOB domain-containing protein 1
TrEMBLM0TP231e-150M0TP23_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P09700_0011e-151(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26453790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-65LOB domain-containing protein 1