PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P10000_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 474aa    MW: 51662.5 Da    PI: 8.2924
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P10000_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.73e-111743127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                           ++++ C+++ rtG C+yG+rC+++H++
  GSMUA_Achr8P10000_001 17 PGEPDCSHYVRTGSCSYGERCRYNHPR 43
                           5789*********************96 PP
2zf-CCCH33.95.3e-116791327
                           S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                           ++ C ++++tGtCk+G++Ck+ H++
  GSMUA_Achr8P10000_001 67 QPVCEYYMKTGTCKFGSTCKYRHPR 91
                           689*******************995 PP
3zf-CCCH391.3e-12112137227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            ++++C+++++tG+Ck+G++CkF+H++
  GSMUA_Achr8P10000_001 112 GEKECSYYMKTGHCKFGSTCKFHHPQ 137
                            7899********************97 PP
4zf-CCCH39.49.9e-13268294127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            +++++C+f++rtG Ck+G++Ck++H+p
  GSMUA_Achr8P10000_001 268 PGQPECQFYMRTGDCKFGATCKYHHPP 294
                            5789*********************97 PP
5zf-CCCH33.19.5e-11317340427
                            ---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                             lC+++a+ G Ck+G +CkF H++
  GSMUA_Achr8P10000_001 317 QLCNYYAQHGMCKFGTTCKFDHPM 340
                            69********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.3191644IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-61643IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-81843IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-52144IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-42243IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.1086492IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-76591IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-66692IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-96791IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-56991IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-6110137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.291110138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-6112138IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-10112137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4116137IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6267294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.694267295IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-10269294IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5271294IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001273293IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6311339IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089313341IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-6313340IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-7317340IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-5317338IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MWRLGLGEGS SSYPERPGEP DCSHYVRTGS CSYGERCRYN HPRDHGALTG AGTGRTGAVE  60
YLERADQPVC EYYMKTGTCK FGSTCKYRHP RQGSGSIPPV LLNDCGYPLR PGEKECSYYM  120
KTGHCKFGST CKFHHPQQAE ALVPSPAPAF YSPVQPLSIP SPQQYPPTVT WQFTRPSVFP  180
GSYMPGPYAP MLLSSGVVPV QGWNPYPVPM SSVVSHGGHQ AVQAGQVYGL PNQPFPLMPA  240
YSGPLTPVSS SVGPSNASRR GDKFPERPGQ PECQFYMRTG DCKFGATCKY HHPPDWSISK  300
GNCVLSPLGL PLRPGAQLCN YYAQHGMCKF GTTCKFDHPM GTLSCSPSAS SLFDMPVSPY  360
PIGLSVATFA PSSSSSELQP EFSSTDEVDR FVDFAAVVGS GALSPVVDAI QRLDRRPHVL  420
HQHPLPLVVA HTEPADLHHR GAEAVHCKHH AVRRGRRLRE CEQSVGGLPI RVHH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009411695.10.0PREDICTED: zinc finger CCCH domain-containing protein 5-like
SwissprotQ5NAW21e-154C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLM0TP530.0M0TP53_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P10000_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-131C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]