PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P10020_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NF-YB
Protein Properties Length: 175aa    MW: 18990.1 Da    PI: 5.9393
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P10020_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB175.45.8e-5528123297
                  NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 
                            +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wal tlGf+dyvep++ yl k
  GSMUA_Achr8P10020_001  28 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALNTLGFDDYVEPMRRYLLK 115
                            89************************************************************************************** PP

                  NF-YB  90 yrelegek 97 
                            yre+eg++
  GSMUA_Achr8P10020_001 116 YREMEGDR 123
                            ******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.2E-5325150IPR009072Histone-fold
SuperFamilySSF471132.17E-4030150IPR009072Histone-fold
PfamPF008087.3E-283397IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.3E-186179No hitNo description
PROSITE patternPS0068506480IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.3E-188098No hitNo description
PRINTSPR006151.3E-1899117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MADNMGGSVE SDGHHNCAGS ASGDGGIKEQ DRLLPIANVG RIMKQILPPN AKISKEAKET  60
MQECVSEFIS FVTGEASDKC HKEKRKTVNG DDICWALNTL GFDDYVEPMR RYLLKYREME  120
GDRAATGGHS NKATGSDAGD QDAVGEQRRN QPSPGAHLMF NAMETSHNPS ASRGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B5e-4427118192Transcription factor HapC (Eurofung)
4g92_B5e-4427118192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-90HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009411690.11e-130PREDICTED: nuclear transcription factor Y subunit B-1-like
SwissprotO822482e-55NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLM0TP551e-129M0TP55_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P10020_0011e-130(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.18e-58nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]