PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P10040_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 447aa    MW: 48721.2 Da    PI: 9.3156
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P10040_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-0583105123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C++C k F r  nL+ H r H
  GSMUA_Achr8P10040_001  83 FVCEICRKGFQRDQNLQLHRRGH 105
                            89*******************88 PP
2zf-C2H211.40.00097160182123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            +kC +C+k +  +s+ k H + +
  GSMUA_Achr8P10040_001 160 WKCDKCSKKYAVQSDWKAHSKIC 182
                            58*****************9876 PP
3zf-C2H210.60.0017190208523
                            TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                            dCg+ Fsr++++++H   +
  GSMUA_Achr8P10040_001 190 DCGTIFSRRDSFMTHRAFC 208
                            9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.1E-582105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.07E-782105No hitNo description
PROSITE profilePS5015710.61683105IPR007087Zinc finger, C2H2
SMARTSM003550.06483105IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
SMARTSM00355160125155IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-4148181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.07E-7155180No hitNo description
SMARTSM00355150160180IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MSNITGGGGS FSSGSNAGED EVHKQSLLSC DSPAAAENSD ISAAQLPQLP PAKKKRNLPG  60
TPADPKAEVI ALSPKTLMAT NRFVCEICRK GFQRDQNLQL HRRGHNLPWK LRPRNGGSEA  120
RKKVYVCPEP TCVHHNPSRA LGDLTGIKKH YCRKHGEKKW KCDKCSKKYA VQSDWKAHSK  180
ICGTRQYKCD CGTIFSRRDS FMTHRAFCDA LAQENNELSQ PLMATMASSL QGQAPPRLVM  240
PIQHTSNTSS STTVPEFSYD MKNPPAIDAL AASLASRDMA GGMFPSFLGI PSSSGPVSFD  300
GLFEAQMPRP TAVSAHSSAT SQLQNAAQIG ATRRGMASVM AGRPYQLTSI HGGGLANLFY  360
ASSVRETGDG SLKEMMARCG SGDVMTVDFL GVGGQRRPHM QQQQQRERHN MEFGGVVLRT  420
GMETPHHLQQ QMAYGRSDEP ENPVWDM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-32156219366Zinc finger protein JACKDAW
5b3h_F1e-32156219366Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109122KLRPRNGGSEARKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412868.10.0PREDICTED: protein indeterminate-domain 2-like
TrEMBLM0TP570.0M0TP57_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P10040_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.16e-95indeterminate(ID)-domain 2