PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P11070_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 845aa    MW: 91995.7 Da    PI: 8.029
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P11070_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.92.4e-15277322555
                            HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            hn+ Er+RRdriN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  GSMUA_Achr8P11070_001 277 HNQSERKRRDRINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 322
                            9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.2E-18271343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.803272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-19275346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-13277322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.11E-17277326No hitNo description
SMARTSM003533.0E-18278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF139120.0056454476IPR007087Zinc finger, C2H2
SMARTSM003555.3454476IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.517454476IPR007087Zinc finger, C2H2
PROSITE patternPS000280456476IPR007087Zinc finger, C2H2
PfamPF139125.2E-9612637IPR007087Zinc finger, C2H2
SuperFamilySSF576671.15E-7612635No hitNo description
PROSITE profilePS501579.827613640IPR007087Zinc finger, C2H2
SMARTSM003550.13613635IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280615635IPR007087Zinc finger, C2H2
SuperFamilySSF576671.15E-7664691No hitNo description
PfamPF139127.4E-13668692IPR007087Zinc finger, C2H2
PROSITE profilePS501579.349669691IPR007087Zinc finger, C2H2
SMARTSM003550.46669691IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280671691IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046872Molecular Functionmetal ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    Send to blast
MSQRVPSWDV DDPPFNPSSS NLPLHRYHPS GAPLGRLMGY EVAELAWENG QLALHGLVPS  60
RTGAKPGADA ACSKHHLHHH PSGTLESVVN QATGAAARSP VLEGWLRRST SVAVDALVPC  120
QDDVASNRIA DPDAPPCCKR ARMVGVCSSQ GSAAGSLPGR VDSTTFVTLD TWREDDVGLT  180
ATATTATTAT ATDTSAWPET ENTSLGKRKV RALYDHVSIS HTSSQTKVIL MHTSTYHNTT  240
TKKKKNNNYY YYLDQNPSWE VGKPSGATKK SRAAAIHNQS ERKRRDRINQ RMKTLQKLVP  300
NSSKTDKASM LDEVIEYLKQ LQAQVQMMSR MSSMMVAAMQ QLQMPMVAQL LPHMAQFPQL  360
PHMGLMDFAS IGRSVPPVLP LLHPSAFLHL AATGGWDGIG DRRPVGSVLP DPFSALLACQ  420
MAQQPMSLDE YSRMVTLLQH LSQNQSPANL KSSHYCRICK KGFGCGRALG GHMRAHGIVD  480
DYAADAEDDP SGCSDWDGRM NSAAAGTKRM YALRTNPARL RSCREEEEEE EEGYESVPAS  540
SRSEGDVDLA GWSKGKRSRR AKVVGMSEEE DLASCLMMLS AARQTVAVGV TTEIPQGPAF  600
LPPAQPSVPR GTFECKACKK VFSSHQALGG HRASHKKNVA AASTSTAIVP FDDPAPLAIT  660
PLRKRSKVHE CSICHRVFTS GQALGGHKRC HWITSSSPDP GLKLQPLPHH ANLPHQLTLR  720
PMFDEPLDLN QPARADEIAR GTRDIGSPLR LQMPAAIYLQ AWIDRRDVGR NRACATSSDK  780
NDDHNNVHGK DDNNTEMSGL NVDDEVDSNV KRAKLSELKD INMGEDSSPW LQVGIGSSAN  840
ESSEA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280285ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009411572.20.0PREDICTED: transcription factor UNE10
TrEMBLM0TPG00.0M0TPG0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P11070_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-47bHLH family protein