PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P11160_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

GRAS

Protein Properties

Length: 667aa MW: 72670.4 Da PI: 6.5108

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P11160_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	309.6	7.3e-95	294	666	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..........sse 76 +lL+e+A++v+++++ a+ +Larl+++ sp+g+p+ R a+yf+eAL+ l++ ++++ +a p+s+ ++++ +++ GSMUA_Achr8P11160_001 294 ADLLFEAAKMVEARNFVGAHGILARLNHQlpsPSPSGKPLIRSAFYFKEALQLILSNGSNTILSATPTSHRQQSTfsaplmthldVVH 381 689***********************9988899******************9999999999988888888999999999999 PP GRAS 77 elaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeelee 160 +l+a+k+fsevsPi++fs++t+ qa+le+++g++r+Hi Dfdi+ G+QW +++q+La+R+ + +l+iT+++s+ s+++ el+ GSMUA_Achr8P11160_001 382 KLNAYKAFSEVSPIIQFSNFTCIQALLEELDGCDRIHIMDFDIGFGGQWSSFMQELAQRRcssaGAVRMLKITVFVSHYSHNNMELHL 469 99999**************************************************9887555679****9999*** PP GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh 248 ++++L++fA+ l++pfe +v ++l+++++ eL+ gEa+aVnl + +l + +L+lvk+lsPk+vv v+q +d+ GSMUA_Achr8P11160_001 470 IQDNLSHFASDLNIPFELKV---RSLDSFDPLELHGLGGEAIAVNLPIGSANLS---------FPVLLRLVKQLSPKIVVSVDQGCDR 545 ***************8...899999999999999******999885.........567****************** PP GRAS 249 nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336 ++ +Fl++fl+a++ +l+ds++a+ ++++++++k+Er+ll+++i++ v + + ++ Wr +e+aGF p+++s+++++q GSMUA_Achr8P11160_001 546 SDLPFLQHFLHAFQSSLVLMDSIDAS-GTNQDTASKIERFLLQPKIESSVLGRYCA----ADKMLPWRTLFETAGFVPIQFSNFTETQ 628 *********************9.8999****************99998....88999******************* PP GRAS 337 aklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 a++ll++v+ +g++ve++++sl+l+W++++LvsvSaWr GSMUA_Achr8P11160_001 629 AECLLKRVQIRGFHVEKRQASLYLYWQRKELVSVSAWR 666 ***********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	37.929	267	646	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.5E-92	294	666	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence Send to blast
MRGLPYHGQG KGGLEAVETI FEGNQALFWV NKRPKLVIQQ GREPRSVLDH RSPSPPTSTA 60 TLSSSLGGGS SDTAGVAAVS DIPTNKWVLA DSTAEVSGGA VGKEEWAAEL QPIPTGLDMG 120 FVAGGEKCGL GVDDWEAILS ETSAASPGRE QTFFRWIMGD VDDPSAAGTA DEASVSAPTD 180 SSLPLSSNVA SGGGFSLAGN SISSPLSLPQ GMYFPDTLKR HPAIADQIPQ KLPFLDSAAN 240 SDLFLRRQSY QQQSHGFPLR QLQNRSVKPK VAAFVDDVTS AVAAQQLHLQ HALADLLFEA 300 AKMVEARNFV GAHGILARLN HQLPSPSPSG KPLIRSAFYF KEALQLILSN GSNTILSATP 360 TSHRQQSTFS APLMTHLDVV HKLNAYKAFS EVSPIIQFSN FTCIQALLEE LDGCDRIHIM 420 DFDIGFGGQW SSFMQELAQR RCSSAGAVRM LKITVFVSHY SHNNMELHLI QDNLSHFASD 480 LNIPFELKVR SLDSFDPLEL HGLGGEAIAV NLPIGSANLS FPVLLRLVKQ LSPKIVVSVD 540 QGCDRSDLPF LQHFLHAFQS SLVLMDSIDA SGTNQDTASK IERFLLQPKI ESSVLGRYCA 600 ADKMLPWRTL FETAGFVPIQ FSNFTETQAE CLLKRVQIRG FHVEKRQASL YLYWQRKELV 660 SVSAWRG

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence Send to blast

MRGLPYHGQG KGGLEAVETI FEGNQALFWV NKRPKLVIQQ GREPRSVLDH RSPSPPTSTA  60
TLSSSLGGGS SDTAGVAAVS DIPTNKWVLA DSTAEVSGGA VGKEEWAAEL QPIPTGLDMG  120
FVAGGEKCGL GVDDWEAILS ETSAASPGRE QTFFRWIMGD VDDPSAAGTA DEASVSAPTD  180
SSLPLSSNVA SGGGFSLAGN SISSPLSLPQ GMYFPDTLKR HPAIADQIPQ KLPFLDSAAN  240
SDLFLRRQSY QQQSHGFPLR QLQNRSVKPK VAAFVDDVTS AVAAQQLHLQ HALADLLFEA  300
AKMVEARNFV GAHGILARLN HQLPSPSPSG KPLIRSAFYF KEALQLILSN GSNTILSATP  360
TSHRQQSTFS APLMTHLDVV HKLNAYKAFS EVSPIIQFSN FTCIQALLEE LDGCDRIHIM  420
DFDIGFGGQW SSFMQELAQR RCSSAGAVRM LKITVFVSHY SHNNMELHLI QDNLSHFASD  480
LNIPFELKVR SLDSFDPLEL HGLGGEAIAV NLPIGSANLS FPVLLRLVKQ LSPKIVVSVD  540
QGCDRSDLPF LQHFLHAFQS SLVLMDSIDA SGTNQDTASK IERFLLQPKI ESSVLGRYCA  600
ADKMLPWRTL FETAGFVPIQ FSNFTETQAE CLLKRVQIRG FHVEKRQASL YLYWQRKELV  660
SVSAWRG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-27	329	666	36	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018686265.1	0.0	PREDICTED: scarecrow-like protein 27
Refseq	XP_018686266.1	0.0	PREDICTED: scarecrow-like protein 27
Refseq	XP_018686267.1	0.0	PREDICTED: scarecrow-like protein 27
Refseq	XP_018686268.1	0.0	PREDICTED: scarecrow-like protein 27
TrEMBL	M0TPG9	0.0	M0TPG9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P11160_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2020	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-105	GRAS family protein