PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P11430_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 546aa    MW: 61731.6 Da    PI: 7.0098
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P11430_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.66.1e-15372420255
                            HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            r +h   ErrRR+++N++f  Lr+l+P+      +K +Ka+iL  +++Y+k+L+
  GSMUA_Achr8P11430_001 372 RGNHVLSERRRREKLNEKFLALRSLVPTG-----GKIDKASILDDTTQYLKHLE 420
                            7899************************8.....8*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.5E-5717200IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.914370419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-18371431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-18372428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-15372424No hitNo description
PfamPF000101.9E-12372420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-17376425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MEADLEIHEE LPEKHHLRKQ IAATVRKIQW SYAIFWSIST RQPGVLAWSD GYYNGDIKTR  60
KMTQPIELKA DQMGLQRSEQ LRELYETLSA GDSIQQTRRP SASLSPEDLT DAEWYYLVCM  120
TFKFTLGQGL PGKALANNQH IWLNNAQFAD SKIFSRSLLA KSASIQTVVC IPFMGGVLEL  180
GTTELILEDV DLVKQITSFF WELPNPICYE QSISSPQLAE RGEGIICPDI DNGIDNSIPL  240
GDHNLITDRQ TPLESDPTHF PFPFHSYVSI EHTESVKLED LLGADGLNGT SRTHSMQLHS  300
SLDLDGDDSH YAETVATILR TSKQVNPVLC FLKVSFRSSF VVWRRGFNTP KSFMSTPQKL  360
LKKILMDRAW WRGNHVLSER RRREKLNEKF LALRSLVPTG GKIDKASILD DTTQYLKHLE  420
RRVQELESGT AITNEWKPLG NKRKACDIDE GVAEHHFVLS KHGPVHVTVT VKEKEVLVEL  480
RCPWRECLLL EVVESMSNLH LDPISVQSSS VDGMLALSVK SKLRSSNVAS PGMIKRSLQR  540
VISKCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-213020024192Transcription factor MYC3
4rqw_B3e-213020024192Transcription factor MYC3
4rs9_A3e-213020024192Transcription factor MYC3
4yz6_A3e-213020024192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1371382RGNHVLSERRRR
2378383ERRRRE
3379384RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009411528.10.0PREDICTED: anthocyanin regulatory Lc protein-like
TrEMBLM0TPJ60.0M0TPJ6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P11430_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.15e-88bHLH family protein