PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P11580_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family YABBY
Protein Properties Length: 219aa    MW: 23908.4 Da    PI: 7.8077
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P11580_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY2312.9e-71171806170
                  YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93 
                             seq+Cyv+CnfC+t+lavsvP+tslfk+vtvrCGhCt+llsvn++      a + hl+++   + +++l ++ +        + s  
  GSMUA_Achr8P11580_001  17 PSEQLCYVHCNFCDTVLAVSVPYTSLFKTVTVRCGHCTNLLSVNMRGLLLPAANQLHLSHACLTPAHHNLLDDLQCPPPSLLLDPSIL 104
                            68****************************************9999988888888888998888866666665555444444433333 PP

                  YABBY  94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                            +  ++    +  +e +pr p v+rPPekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+ihfgl
  GSMUA_Achr8P11580_001 105 NCSTTAP-VKGVEEVLPRSPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGL 180
                            3333333.46778999***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.1E-7017180IPR006780YABBY protein
SuperFamilySSF470951.06E-7124173IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.7E-4129172IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MSSSSAAFSL DHLSPPPSEQ LCYVHCNFCD TVLAVSVPYT SLFKTVTVRC GHCTNLLSVN  60
MRGLLLPAAN QLHLSHACLT PAHHNLLDDL QCPPPSLLLD PSILNCSTTA PVKGVEEVLP  120
RSPVVNRPPE KRQRVPSAYN RFIKDEIQRI KAGNPDITHR EAFSAAAKNW AHFPHIHFGL  180
MPDQGLKKAS VRQAPEGEDV LPKEGFYATA AANMGVTPF
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018685706.11e-157PREDICTED: protein YABBY 4-like isoform X1
SwissprotQ01JG22e-84YAB5_ORYSI; Protein YABBY 5
SwissprotQ0JBF02e-84YAB5_ORYSJ; Protein YABBY 5
TrEMBLM0TPL11e-161M0TPL1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P11580_0011e-162(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.14e-83YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]