PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P11980_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 211aa    MW: 23236 Da    PI: 5.1392
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P11980_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.1e-1752102155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            + ykGVr++    +Wv+e+r+p   +k+ r++lg+f tae+Aa+a++ a+ +l+g
  GSMUA_Achr8P11980_001  52 PVYKGVRRRN-GDKWVCEVREP---NKKSRIWLGTFHTAEMAARAHDVAAMALRG 102
                            68*****877.9******9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-1252102IPR001471AP2/ERF domain
SMARTSM003806.6E-2753116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-3153112IPR001471AP2/ERF domain
PROSITE profilePS5103221.52253110IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2153111IPR016177DNA-binding domain
PRINTSPR003671.1E-75465IPR001471AP2/ERF domain
CDDcd000183.34E-2754112No hitNo description
PRINTSPR003671.1E-77692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MDSFSSDSLD SPLARRSAGA AASDEEVSYA TVSSAPPKRR AGRTKFRETR HPVYKGVRRR  60
NGDKWVCEVR EPNKKSRIWL GTFHTAEMAA RAHDVAAMAL RGRSACLNFA DSPWRLPVPE  120
SSSPADIRKA AARVAEAFLP RPSSETPEQM QEQMATAWAA ADDAFFVEDG LNFGMQGYLD  180
MAEGLLIDPP PPPMDYEDDS DGIVPLWSYA V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-13511091271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009411456.11e-153PREDICTED: dehydration-responsive element-binding protein 1G
SwissprotA2XWL61e-67DRE1E_ORYSI; Dehydration-responsive element-binding protein 1E
SwissprotQ8H2731e-67DRE1E_ORYSJ; Dehydration-responsive element-binding protein 1E
TrEMBLM0TPQ11e-152M0TPQ1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P11980_0011e-153(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.12e-47C-repeat-binding factor 4
Publications ? help Back to Top
  1. Chen JQ,Meng XP,Zhang Y,Xia M,Wang XP
    Over-expression of OsDREB genes lead to enhanced drought tolerance in rice.
    Biotechnol. Lett., 2008. 30(12): p. 2191-8
    [PMID:18779926]
  2. Li S, et al.
    Mutation of OsGIGANTEA Leads to Enhanced Tolerance to Polyethylene Glycol-Generated Osmotic Stress in Rice.
    Front Plant Sci, 2016. 7: p. 465
    [PMID:27148296]