PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P12060_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRF
Protein Properties Length: 202aa    MW: 21771.2 Da    PI: 10.3998
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P12060_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC81.95.6e-2696140145
                    WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                            ++epgrCrRtDGKkWRCsr+v++++k+CErH+hrgr+r rk++e+
  GSMUA_Achr8P12060_001  96 EPEPGRCRRTDGKKWRCSRDVVPNQKYCERHMHRGRNRPRKPVEA 140
                            69****************************************997 PP
2QLQ62.11.5e-213166237
                    QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                            FT +Qlq+L++Q+l+yKy+aa++PvP +L+++i+k
  GSMUA_Achr8P12060_001 31 VFTFMQLQELEHQALIYKYMAAGLPVPVHLVLPIWK 66
                           5**********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.6E-83066IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.393166IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.9E-153265IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.74796140IPR014977WRC domain
PfamPF088796.2E-2297139IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MEGIVTMAAP SPLMLGLGLG LGRGVGASKP VFTFMQLQEL EHQALIYKYM AAGLPVPVHL  60
VLPIWKSVAA SSFGHYSYPS LMGYGSLCLD YRNIMEPEPG RCRRTDGKKW RCSRDVVPNQ  120
KYCERHMHRG RNRPRKPVEA GATTPITATS TQLSITVPAV GRQLTTDANT GISGGSRVSP  180
PGQGLSHARV LRNDAAGKTV AS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412847.21e-142PREDICTED: growth-regulating factor 10-like isoform X2
SwissprotQ6AWX75e-64GRF12_ORYSJ; Growth-regulating factor 12
TrEMBLM0TPQ91e-147M0TPQ9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P12060_0011e-148(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62213051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36400.19e-40growth-regulating factor 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]