PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P12580_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family G2-like
Protein Properties Length: 345aa    MW: 38801.8 Da    PI: 6.2933
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P12580_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.53.6e-34117171155
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            kpr+rW+peLHe+Fv+av+qLGGsekAtPk +l+lmkv+gLt++hvkSHLQkYR+
  GSMUA_Achr8P12580_001 117 KPRMRWNPELHECFVNAVNQLGGSEKATPKGVLKLMKVEGLTIYHVKSHLQKYRT 171
                            79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.691114174IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-31115172IPR009057Homeodomain-like
SuperFamilySSF466897.88E-17116172IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-25117171IPR006447Myb domain, plants
PfamPF002496.9E-9119170IPR001005SANT/Myb domain
PfamPF143791.9E-22203249IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MFSRETTKIN LSPDTLHDTL DYPDNNFSLS NQILGNSTMV SNDPSKQKEW WTDIIDEDCK  60
ETAVESQPKV CDFIFVGTFI KLQKISIFSF FLLHQPPIHH SVPSNSGEVC AVTSAAKPRM  120
RWNPELHECF VNAVNQLGGS EKATPKGVLK LMKVEGLTIY HVKSHLQKYR TTWYRPDSSE  180
GPSNKKTTLK EELPSLDLKT SFDLTEALRL QVVVQKQLHE QLEIQRNLQL RIEEQGRFLQ  240
MILEKQCKSN IDKLQITSTV EGLSTTTSDI MHSIDKFELP ENDRYIAGSS NGSAETKEGS  300
WQVSIRHKMP EAEPSAEKEA DAVDGSHSSA CKPAKGQVGE TKTPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-29116175160Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-29116175160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-29116175160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-29116175160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-29116175160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-29116175160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-29116175160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-29116175160Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phosphate starvation signaling. Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes. Functionally redundant with PHR2 and PHR3 in regulating Pi starvation response and Pi homeostasis. {ECO:0000250|UniProtKB:Q10LZ1}.
UniProtTranscription factor involved in phosphate starvation signaling (PubMed:18263782, PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR2 and PHR3 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269|PubMed:18263782, ECO:0000269|PubMed:26082401}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by Pi starvation. {ECO:0000269|PubMed:18263782, ECO:0000269|PubMed:26082401}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018685883.10.0PREDICTED: protein PHOSPHATE STARVATION RESPONSE 1-like isoform X4
RefseqXP_018685884.10.0PREDICTED: protein PHOSPHATE STARVATION RESPONSE 1-like isoform X4
SwissprotB8ANX91e-79PHR1_ORYSI; Protein PHOSPHATE STARVATION RESPONSE 1
SwissprotQ10LZ11e-79PHR1_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 1
TrEMBLM0TPW10.0M0TPW1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P12580_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19713789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.12e-62phosphate starvation response 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]