PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P12900_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 202aa MW: 21866.7 Da PI: 9.252

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P12900_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.001	77	99	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H GSMUA_Achr8P12900_001 77 YECKTCNKCFPSFQALGGHRTSH 99 99**********99998888777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.7E-6	76	104	No hit	No description
Pfam	PF13912	1.1E-11	76	101	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.284	77	104	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	79	99	IPR007087	Zinc finger, C2H2
Pfam	PF13912	4.9E-5	126	140	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
METPEEATAY SNNSDSASND EFVHAVVKGK RTKRQRTQPP PEEEDMANCL ILLAQGRTRR 60 LAEGATTTNG KAGIYVYECK TCNKCFPSFQ ALGGHRTSHR KTKLAAGTTA EEKKLAAGDD 120 ILQIKFSSGQ ALGGHMRRHK PLGAADSQEA KKDKSFLSLD LNLPAPADDG LQRPPSPTLS 180 LASKRPLIFR ASASALVVDC HY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009411362.1	1e-130	PREDICTED: zinc finger protein ZAT5-like
TrEMBL	M0TPZ3	1e-148	M0TPZ3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P12900_001	1e-149	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2013	32	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03510.1	4e-34	C2H2 family protein