PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P14330_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LBD

Protein Properties

Length: 234aa MW: 25480.7 Da PI: 6.4971

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P14330_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121	6.5e-38	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrrkC+++Cv+apyf +++ +++fa++hk+FGasnv kll +lp +r++a+ ++ yeA+ar+++P+yG+v++i++lqqq+ GSMUA_Achr8P14330_001 7 PCGACKFLRRKCVNGCVFAPYFHHQHgAAHFAAIHKVFGASNVAKLLMHLPMADRPEAAVTISYEAQARLQNPIYGCVAHIFALQQQV 94 7*******************998879******************************************************** PP DUF260 88 eqlkaelallkee 100 +l+a++a+l+++ GSMUA_Achr8P14330_001 95 VNLQAQVASLEAQ 107 *****998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.026	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.5E-37	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MAGLGSPCGA CKFLRRKCVN GCVFAPYFHH QHGAAHFAAI HKVFGASNVA KLLMHLPMAD 60 RPEAAVTISY EAQARLQNPI YGCVAHIFAL QQQVVNLQAQ VASLEAQAAR RRGNGIPVGS 120 IGQLEDMLCN TGPPHRQDLQ GFIDQAGDRK TPPQFASTLS MDVNWYPNSV WSLEESTPPT 180 NFDMADEDFS FEAFSLTSCF DMEDEFWRSA CHGNGDLQPA ASAGAGRSWG RGIH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-32	3	110	7	113	LOB family transfactor Ramosa2.1
5ly0_B	3e-32	3	110	7	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009413156.1	1e-177	PREDICTED: LOB domain-containing protein 14-like
TrEMBL	M0TQD6	1e-175	M0TQD6_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P14330_001	1e-176	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2501	38	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31310.1	6e-39	LOB domain-containing protein 14