PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P14360_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 120aa MW: 13254.3 Da PI: 5.816

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P14360_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.3	5.6e-05	35	57	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ Fs+ L H++ H GSMUA_Achr8P14360_001 35 YECTFCKRGFSNAQALGGHMNIH 57 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.7E-5	30	61	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.41E-7	31	62	No hit	No description
Pfam	PF13912	7.0E-6	34	59	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0099	35	57	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.489	35	62	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	37	57	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence Send to blast
MEEDGHKKDA TASSEETSSA EPTGHDDAGT KRPYYECTFC KRGFSNAQAL GGHMNIHRKD 60 RARERPSARM SVDSGSQMTH DTSHFGEDLR LGLTTHGGKG RQEEEEGAEL DLELRLGHQP

Functional Description ? help Back to Top
Source	Description
UniProt	Activation factor which mediates telomerase activity and potentiates responses to auxin through the regulation of BT2. Binds in vitro to the DNA sequence 5'-GACAGTGTTAC-3' of the BT2 promoter. {ECO:0000269\|PubMed:15486103, ECO:0000269\|PubMed:17220202}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018685789.1	2e-43	PREDICTED: transcriptional regulator SUPERMAN-like
Swissprot	Q9SR34	2e-15	TAC1_ARATH; Transcriptional regulator TAC1
TrEMBL	M0TQD9	1e-82	M0TQD9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P14360_001	2e-83	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6363	32	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	2e-16	C2H2 family protein

Publications ? help Back to Top
Ren S,Johnston JS,Shippen DE,McKnight TD TELOMERASE ACTIVATOR1 induces telomerase activity and potentiates responses to auxin in Arabidopsis. Plant Cell, 2004. 16(11): p. 2910-22 [PMID:15486103] Ren S,Mandadi KK,Boedeker AL,Rathore KS,McKnight TD Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1. Plant Cell, 2007. 19(1): p. 23-31 [PMID:17220202]