PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P14540_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 260aa    MW: 28601.1 Da    PI: 6.24
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P14540_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.2e-172168148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+WT+eEd++lv++v+ +G ++W+t +++ g +R +k+c++rw++yl
  GSMUA_Achr8P14540_001 21 RGAWTAEEDQKLVEYVRAHGDKNWRTLPAKAGINRYGKSCRLRWLNYL 68
                           89******************************99************97 PP
2Myb_DNA-binding55.71.1e-1774119148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg+ ++eEd+l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  GSMUA_Achr8P14540_001  74 RGNISKEEDDLIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNHWNTHL 119
                            7899******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.9371668IPR017930Myb domain
SMARTSM007172.2E-132070IPR001005SANT/Myb domain
SuperFamilySSF466897.49E-3020115IPR009057Homeodomain-like
PfamPF002491.7E-162168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-232275IPR009057Homeodomain-like
CDDcd001671.04E-102368No hitNo description
PROSITE profilePS5129425.27169123IPR017930Myb domain
SMARTSM007173.0E-1573121IPR001005SANT/Myb domain
PfamPF002495.9E-1674119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2576122IPR009057Homeodomain-like
CDDcd001671.85E-1378119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MVKKMAERGK KKGVTESVVN RGAWTAEEDQ KLVEYVRAHG DKNWRTLPAK AGINRYGKSC  60
RLRWLNYLRP GIKRGNISKE EDDLIIRLHN LLGNRWSLIA GRLPGRTDNE IKNHWNTHLC  120
KRSLTIDDLN LELNQNVDSA PPFASSHHDF TTGSDAMEEL HLAIMTSPPG GTTHDEPLRL  180
LSPELHLLDL GSVPTLNGGG GNTSNEFGAE AYETGGGDGN GSLDGVMGGI SGTKSDAQAV  240
FDELDRWLIG CEDLALYFLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-30211227107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413212.10.0PREDICTED: myb-related protein 308
RefseqXP_018685496.10.0PREDICTED: myb-related protein 308
TrEMBLM0TQF70.0M0TQF7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P14540_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17778510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-53myb domain protein 3