PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P15620_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WOX
Protein Properties Length: 234aa    MW: 26392.2 Da    PI: 10.6197
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P15620_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-1888147357
                            --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
               Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                            +R+++ +eq++ Le+l++   r+p+  ++e+++++l    +++ ++V++WFqN++a+e++
  GSMUA_Achr8P15620_001  88 TRWNPMPEQIKLLEALYQGgMRTPNPVQIERITAELskygRIEGKNVFYWFQNHKARERQ 147
                            7*****************99**************************************97 PP
2Wus_type_Homeobox115.23.2e-3788149465
      Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                            tRW+P peQik+Le+ly+ G+rtPn  +i+ritaeL++yG+ie+kNVfyWFQN+kaRerqkq
  GSMUA_Achr8P15620_001  88 TRWNPMPEQIKLLEALYQGGMRTPNPVQIERITAELSKYGRIEGKNVFYWFQNHKARERQKQ 149
                            8***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.7E-1285153IPR009057Homeodomain-like
SMARTSM003891.5E-485152IPR001356Homeobox domain
PfamPF000462.0E-1688147IPR001356Homeobox domain
CDDcd000860.0016588149No hitNo description
Gene3DG3DSA:1.10.10.602.7E-789152IPR009057Homeodomain-like
PROSITE profilePS500719.52395148IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MKVHQLTLGL WEQLPSSPST SSSLSSSSTN HHKRLRPLAP KLSSSAVVST TTMAEIISLK  60
SFNSPLTTKF ASRNRRCCLQ MQLQSGGTRW NPMPEQIKLL EALYQGGMRT PNPVQIERIT  120
AELSKYGRIE GKNVFYWFQN HKARERQKQK RSALLALATN SASLPNLLKV RTKHGFSPHA  180
HFLHDGSCKR KCRSWGSLEP DVEDSGPGDR TLELFPLHPE WKQVGYEKES INIS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018685767.11e-133PREDICTED: WUSCHEL-related homeobox 4-like
SwissprotQ25AM22e-51WOX4_ORYSI; WUSCHEL-related homeobox 4
SwissprotQ7XTV32e-51WOX4_ORYSJ; WUSCHEL-related homeobox 4
TrEMBLM0TQR51e-173M0TQR5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P15620_0011e-174(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126923035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.13e-41WUSCHEL related homeobox 4