PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P15820_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 170aa    MW: 18366.9 Da    PI: 10.8789
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P15820_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-191665255
                    AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                           +y+GVr ++ +gr++AeIrd +     r +r++lg+f+t+ eAa a+++a+++l+g
  GSMUA_Achr8P15820_001 16 HYRGVRKRP-WGRYAAEIRDpW-----RkARVWLGTFDTPVEAALAYDRAARSLRG 65
                           69*******.**********88.....45*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.04E-281575No hitNo description
SMARTSM003801.2E-341679IPR001471AP2/ERF domain
PROSITE profilePS5103221.9971673IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-221675IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-301674IPR001471AP2/ERF domain
PfamPF008477.0E-131665IPR001471AP2/ERF domain
PRINTSPR003676.1E-101728IPR001471AP2/ERF domain
PRINTSPR003676.1E-103955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MEGTRSGGER KQQQQHYRGV RKRPWGRYAA EIRDPWRKAR VWLGTFDTPV EAALAYDRAA  60
RSLRGIKAKT NFPHQFAPAP PPPPNPPPSF AAALDLNHPS LHLWLGPTPT PPSPSPPSPP  120
PSTKLALGGF VPREPPAAAT SFYAVSAGGL PLDLNEPPPQ LAPALSPLFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-211573463ATERF1
3gcc_A2e-211573463ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413363.11e-116PREDICTED: ethylene-responsive transcription factor 12-like
TrEMBLM0TQT51e-115M0TQT5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P15820_0011e-116(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.12e-31ERF domain protein 12