PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P16070_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

ERF

Protein Properties

Length: 193aa MW: 21208.6 Da PI: 7.9774

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P16070_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	30.2	1.1e-09	57	100	10	56
AP2 10 kkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++ grW++e+r+p+ r r+ lg+f t+e+A +a++ + +l+ge GSMUA_Achr8P16070_001 57 SRGGRWACEVREPR----RkSRICLGTFSTPEMASRAHDVTAMALRGE 100 6789***99973....35***********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.0E-21	50	109	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	16.647	50	107	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.0E-6	51	62	IPR001471	AP2/ERF domain
CDD	cd00018	1.85E-18	51	109	No hit	No description
SuperFamily	SSF54171	1.11E-14	52	109	IPR016177	DNA-binding domain
SMART	SM00380	1.5E-14	54	113	IPR001471	AP2/ERF domain
Pfam	PF00847	3.2E-5	58	100	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.0E-6	89	109	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MNCDNSSSSS SSSVSTSSSS SSTTRNQHQP APSPKRKAGR KKFRETRHPV YHSVPESRGG 60 RWACEVREPR RKSRICLGTF STPEMASRAH DVTAMALRGE SAQLNFPDSA WTVPRARSAV 120 PEDIRRAATQ SEAAAPRPAP VFVDEEAVFN MPGLMEDMAR GMLVTPPSMQ RGVDWDGAGD 180 ECVWDLSLWT DEL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269\|PubMed:17136305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269\|PubMed:17136305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009413459.1	1e-117	PREDICTED: dehydration-responsive element-binding protein 1F-like
Swissprot	A2WZI4	1e-55	DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
Swissprot	Q8S9Z5	1e-55	DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBL	M0TQW0	1e-138	M0TQW0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P16070_001	1e-139	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP196	36	261

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25490.1	1e-46	C-repeat/DRE binding factor 1

Publications ? help Back to Top
Wang Q, et al. Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice. Plant Mol. Biol., 2008. 67(6): p. 589-602 [PMID:18470484] Liu HH,Wang YG,Wang SP,Li HJ Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses. Genet. Mol. Res., 2015. 14(1): p. 2331-40 [PMID:25867379]