PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P16250_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 159aa    MW: 17780.1 Da    PI: 7.0772
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P16250_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24e-18858256
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                           +y+GVr +k +g+Wv+eIr+p   gk+ r++lg+f +ae+Aa a++ a+++l+g+
  GSMUA_Achr8P16250_001  8 HYRGVRKRK-WGKWVSEIREP---GKKSRIWLGSFESAEMAAVAHDVAALRLKGH 58
                           7*****999.**********8...557*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.9E-12858IPR001471AP2/ERF domain
CDDcd000188.75E-30867No hitNo description
SuperFamilySSF541711.24E-21867IPR016177DNA-binding domain
SMARTSM003804.5E-38871IPR001471AP2/ERF domain
PROSITE profilePS5103223.275865IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-31867IPR001471AP2/ERF domain
PRINTSPR003676.6E-10920IPR001471AP2/ERF domain
PRINTSPR003676.6E-103147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MRADAAVHYR GVRKRKWGKW VSEIREPGKK SRIWLGSFES AEMAAVAHDV AALRLKGHDA  60
QLNFPESAEQ LPRPRSSDPK DIRSAALEAA ARLRCKTTTA RAGMSSALER LGNDELGLDS  120
PKMWLDLAEA LLLTPPAWNS EVSELEDWEH HGSLWDPFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-19865260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-19865563ATERF1
3gcc_A7e-19865563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413420.11e-112PREDICTED: ethylene-responsive transcription factor ERF038-like
SwissprotQ9C9I21e-34ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLM0TQX81e-110M0TQX8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P16250_0011e-111(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.14e-27ERF family protein