PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P16260_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family DBB
Protein Properties Length: 140aa    MW: 15627.8 Da    PI: 7.8639
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P16260_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.71.8e-06447542
               zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                            C+ +e   +   C  ++  lC  C ++ H        H++vpl
  GSMUA_Achr8P16260_001  4 LCDVCEGAVAAVLCCADEAALCWGCDEKVHAAnklagkHQRVPL 47
                           7*****************************66899999999986 PP
2zf-B_box32.32e-1061103238
               zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                            + ++C+ ++ek   +fC +++ llC++C ++ H        H+
  GSMUA_Achr8P16260_001  61 QTPTCDICQEKVRYFFCLEDRALLCRQCDVAVHTAtpylssHR 103
                            7799***************************995556666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.21147IPR000315B-box-type zinc finger
PfamPF006432.8E-5347IPR000315B-box-type zinc finger
CDDcd000217.21E-6347No hitNo description
SMARTSM003363.8E-11447IPR000315B-box-type zinc finger
Gene3DG3DSA:3.30.40.101.8E-45094IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578458.7E-65795No hitNo description
SMARTSM003362.3E-1360107IPR000315B-box-type zinc finger
PROSITE profilePS501199.44260107IPR000315B-box-type zinc finger
PfamPF006431.7E-861103IPR000315B-box-type zinc finger
CDDcd000212.86E-765107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MKILCDVCEG AVAAVLCCAD EAALCWGCDE KVHAANKLAG KHQRVPLLPT NSNSRSSSSS  60
QTPTCDICQE KVRYFFCLED RALLCRQCDV AVHTATPYLS SHRRFLITGV RVPLQHNYLT  120
KDGNNNNHPL ESRDGRFNYQ
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413421.11e-102PREDICTED: B-box zinc finger protein 22-like
RefseqXP_009413422.11e-102PREDICTED: B-box zinc finger protein 22-like
RefseqXP_018686153.11e-102PREDICTED: B-box zinc finger protein 22-like
RefseqXP_018686154.11e-102PREDICTED: B-box zinc finger protein 22-like
RefseqXP_018686155.11e-102PREDICTED: B-box zinc finger protein 22-like
RefseqXP_018686156.11e-102PREDICTED: B-box zinc finger protein 22-like
RefseqXP_018686157.11e-102PREDICTED: B-box zinc finger protein 22-like
SwissprotQ9SYM21e-51BBX22_ARATH; B-box zinc finger protein 22
TrEMBLM0TQX91e-100M0TQX9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P16260_0011e-101(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121512528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-51light-regulated zinc finger protein 1