PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P16700_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NF-YA
Protein Properties Length: 288aa    MW: 31594.5 Da    PI: 9.6964
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P16700_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.42.1e-32135191158
              CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                            +ep+YVNaKQy++Il+RRq Ra+le+++kl  ksrkpylheSRh hA++R+RgsgGrF
  GSMUA_Achr8P16700_001 135 EEPIYVNAKQYSAILRRRQFRARLEAQNKL-MKSRKPYLHESRHLHAMKRARGSGGRF 191
                            69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.6E-37133194IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.308134194IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.8E-27136191IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.0E-22137159IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.0E-22168191IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MAENGNQLKH LGHQMHNQNS PSTQSTGQPH QEVSETSDCN NHEQHISSQS GVNNTPKKPV  60
ECHMKAVLSL GASEATYAPP KLDCSQPFAC ISYPYADIYY GGIPAVYGPH AIIHPQMAGV  120
ASYARVPLPT EPAAEEPIYV NAKQYSAILR RRQFRARLEA QNKLMKSRKP YLHESRHLHA  180
MKRARGSGGR FLNTKQQQQQ QEDAPPSAIM VCQDAPTSKY LSGGHPTGSS ATLTTSNMMM  240
ASTSGSRTVQ QHQFGFSSSK YRPHATVSVQ GGCSKMQNGS EHRVPPMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-21135209276NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413487.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
RefseqXP_018685180.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
TrEMBLM0TR230.0M0TR23_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P16700_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137338121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.11e-43nuclear factor Y, subunit A6