PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P17080_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 334aa    MW: 36688.7 Da    PI: 7.1879
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P17080_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.5e-12197222126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            y   +C+++ +tG+C yGd+CkF+H+
  GSMUA_Achr8P17080_001 197 YQPDICKDYKETGYCGYGDSCKFMHD 222
                            67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.57E-9195228IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878196224IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7196223IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-13197227IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-10197222IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.106.1E-14261322IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139203.9E-8274315No hitNo description
SuperFamilySSF578502.64E-13274317No hitNo description
CDDcd001628.65E-8275316No hitNo description
SMARTSM001841.3E-4275312IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.586275313IPR001841Zinc finger, RING-type
PROSITE patternPS005180290299IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAEPGEVCNF FRKPTKNKNI RKRKTTGSDD EDGAADDAPS TGPAIVKSRK SIADNKLMFS  60
SSSSKPSSKP SADSGGAGDP DEDAGERGSG ALFQFESSKE IQVQHDSRAT AVLETETEFS  120
KDARAIRERV LKQAGEVLKG KSKAGGGDDK LYKGIHGYTD YKAGFRREQT VAGEKAGGAH  180
GPLRASAHIR LSARFDYQPD ICKDYKETGY CGYGDSCKFM HDRGDYKPGW QLEKEWEEAE  240
KARKRGLAAG GGGGDGDDGD QEDDDDDDDS LPFACYICRQ PFEDPVVTKC KHYFCEHCAL  300
KHHAKNKKCF VCNKPTLGIF NTAREIRKKM VQEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M1e-68633013317RING finger protein 113A
5z58_M1e-68633013317RING finger protein 113A
6ff4_t1e-68633013317RING finger protein 113A
6ff7_t1e-68633013317RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413513.10.0PREDICTED: zinc finger CCCH domain-containing protein 15
SwissprotQ8GX841e-148C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLM0TR610.0M0TR61_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P17080_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80713645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-117C3H family protein