PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P17650_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 296aa    MW: 32873.2 Da    PI: 6.0662
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P17650_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.46.3e-14110161155
                            CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +r+ h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A++Y+k+L+
  GSMUA_Achr8P17650_001 110 QRMVHIAVERNRRKQMNEYLAVLRSLMPPS---YVPRGDQASIVGGAINYVKELE 161
                            7999**************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.37E-13108165No hitNo description
Gene3DG3DSA:4.10.280.101.4E-13108165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.548109160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-16109173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-11110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MALEAVVFSQ GLFGYACKES CTTPGGGACG YDLGDVSMEA KSSMLDGDMD RTRYPSCSDL  60
VQDLEGWHAN YSTAEGQEEA PAEGKATEVV SRRKRPRTKG IKNKEEVESQ RMVHIAVERN  120
RRKQMNEYLA VLRSLMPPSY VPRGDQASIV GGAINYVKEL EQLLQSIQVQ KQLEQRADTD  180
GNQNGVANVD KDYSGNEVMV VKRSAMADIE VTIVESHVNL KVLSRRHPKQ LSKLLTWLQN  240
LRLTPLHLNV TTANERVLYS FSLKVEDDCS YASVTQIAAA VCEMIGRIRE ENIGLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110121RMVHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413580.10.0PREDICTED: transcription factor bHLH96-like isoform X2
TrEMBLM0TRB80.0M0TRB8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P17650_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-65bHLH family protein