PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P18070_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family B3
Protein Properties Length: 208aa    MW: 23168.3 Da    PI: 4.7733
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P18070_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.42.3e-1730126295
                            EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                     B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                            +k+l +sdv+++gr+vlpkk ae+h   + ++e++++ + d+++ + W++k+++  +++s++yvl+ ++ ++vk n L+ gDf++++ 
  GSMUA_Achr8P18070_001  30 QKELRNSDVSQLGRIVLPKKEAEAHlpCLTSREGIMINMDDPDNlQAWTFKYRFwpNNRSRMYVLE-NTGDYVKKNCLQLGDFILIYK 116
                            7999***********************66677999******99999******99888888889999.*******************94 PP

                            -SSSEE..EEE CS
                     B3  85 dgrsefelvvk 95 
                            d +s+ ++v++
  GSMUA_Achr8P18070_001 117 D-DSKDRYVIR 126
                            3.366656655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100175.91E-2427129No hitNo description
Gene3DG3DSA:2.40.330.102.1E-2427132IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-1928128IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.0E-1129131IPR003340B3 DNA binding domain
PROSITE profilePS508638.69829131IPR003340B3 DNA binding domain
PfamPF023621.0E-1330126IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MSLYQGSVLD LRVPALDPGQ AVGGLRFLLQ KELRNSDVSQ LGRIVLPKKE AEAHLPCLTS  60
REGIMINMDD PDNLQAWTFK YRFWPNNRSR MYVLENTGDY VKKNCLQLGD FILIYKDDSK  120
DRYVIRAKKT GSAELCVAPA DEGIFDSIVP DIVVGSARYS DLFLPLAEGI NIAYGYGLSC  180
AFDEDFPMTF LDESTGSASI ASHKSSDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A7e-47251341110B3 domain-containing transcription factor FUS3
6j9b_D7e-47251341110B3 domain-containing transcription factor FUS3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in flowering time regulation. Represses the flowering activator EHD1 by binding specifically to the DNA sequence 5'-CATGCATG-3 of its promoter. {ECO:0000269|PubMed:17592727, ECO:0000269|PubMed:17913295}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018685800.11e-150PREDICTED: B3 domain-containing protein LFL1-like
SwissprotA4LBC01e-52LFL1_ORYSJ; B3 domain-containing protein LFL1
TrEMBLM0TRG01e-153M0TRG0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P18070_0011e-153(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80912736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.12e-47B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang J, et al.
    OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice.
    Plant J., 2013. 73(4): p. 566-78
    [PMID:23083333]
  3. Guo X, et al.
    The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism.
    Plant J., 2013. 75(3): p. 403-16
    [PMID:23581288]
  4. Matsuno K,Fujimura T
    Do rice suspension-cultured cells treated with abscisic acid mimic developing seeds?
    Mol. Genet. Genomics, 2015. 290(4): p. 1551-62
    [PMID:25732383]