PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P18260_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family RAV
Protein Properties Length: 1029aa    MW: 114826 Da    PI: 9.4099
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P18260_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.78.1e-1067107248
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaia 48 
                            +ykGV   + +grW A+I++      r +r++lg+fg + +Aa+a++ 
  GSMUA_Achr8P18260_001  67 RYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFGDEADAARAYDT 107
                            599**8778.8*********......44**********99******96 PP
2B390.11.7e-28156258197
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k  tpsdv+k++rlv+pk++ae+h      +g   +++ l +ed  g++W+++++y+ +s++yvltkGW++Fvk+++Lk++D+v F
  GSMUA_Achr8P18260_001 156 FDKSVTPSDVSKLNRLVIPKQHAEKHfplkssSGMACKGVLLNVEDAGGKVWRFRYSYWSSSQSYVLTKGWSRFVKEKNLKARDVVSF 243
                            899************************9988744445899************************************************ PP

                            EE-SSSEE..EEEEE CS
                     B3  83 kldgrsefelvvkvf 97 
                             ++   e++l++ ++
  GSMUA_Achr8P18260_001 244 WRSTGPEKQLYIDWR 258
                            987667777888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-1067109IPR016177DNA-binding domain
PfamPF008473.4E-567108IPR001471AP2/ERF domain
PROSITE profilePS5103214.27667106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-1267107IPR001471AP2/ERF domain
CDDcd000181.75E-1467106No hitNo description
SMARTSM003808.9E-867112IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.6E-37151260IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-30151257IPR015300DNA-binding pseudobarrel domain
CDDcd100175.04E-21155246No hitNo description
PROSITE profilePS5086312.76156261IPR003340B3 DNA binding domain
PfamPF023624.0E-25156258IPR003340B3 DNA binding domain
SMARTSM010196.8E-23156261IPR003340B3 DNA binding domain
PfamPF104972.4E-36358457IPR018866Zinc-finger domain of monoamine-oxidase A repressor R1
PROSITE profilePS5082710.534705770IPR018501DDT domain
SMARTSM005719.7E-13705770IPR018501DDT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1029 aa     Download sequence    Send to blast
MLALYRRSKF NSSCVEEASS IDSEKRLQAP LHAAVALQRL GSGVSLVIDP APEGGIEAES  60
RKLASYRYKG VVPQPNGRWG AQIYERHQRV WLGTFGDEAD AARAYDTHSK AEIVDMLRKH  120
TYRDELQQSK RSYEAGGFAG KRTTPGYLRS SRVILFDKSV TPSDVSKLNR LVIPKQHAEK  180
HFPLKSSSGM ACKGVLLNVE DAGGKVWRFR YSYWSSSQSY VLTKGWSRFV KEKNLKARDV  240
VSFWRSTGPE KQLYIDWRTE AVASNRTMTP AIRPLPVVKL FGVNISELPS PPSNTPFSPP  300
SPPLTISDPM AVPRNAAAAD RRAAEESKTT AEASSSSATS PRKRTKSPGV RVIGGRIYDS  360
ENGKTCHQCR QKTMDFAASC KQLRGDKPCP IKFCHKCLLN RYGENAEEAA VLENWSCPKC  420
RGVCNCSFCM KKKGQQPTGI LIHAAKATGF SSVHELLDNK GSDVLSAANG LRSLSACVPP  480
TCTKVTPKRS RDKEKDHDEQ KDVRCSSIDD EKDEVPAQKQ KKRRLKKLRS LNESDGGNVI  540
ELCNGNARLK NAKARTKGAK KVSAISSKIG MQLNNDEHVP NNCGDNEHED LQHVVMLFKQ  600
LHDDMNNCIN KDEIKVSDKG KKNNVHNKTL CKGQRFQKHG IKNSNSDEAE VLVDMPNKNV  660
KAKLPPKKHK SRKPGAKVPF EHDNISIVVP QGLPLIKVSG YDWAAEDVGA ALQFLEFCNA  720
FSEVLDIKKG EPECVLRELA RGRVGRRGVY SSILQFHIKL LSFIQKDLGD GSISYSTSGE  780
KWLQSLVDCL NESDCALEIP SKCLNKGPLT HNSLDLSEKL RLLNLLCDRT LGTEEVRNWI  840
DEENKKYIER NKELKETIIA AKRKGKDLKK KLKDDVAKAM LFLREGPPLS VAEHENLVSQ  900
ISAETEKAHA EMLEIMELLP KNSDNMRCDA VRTQPVFLEG KGYVYWKLAG CCNNPKIILQ  960
DIGSWDSVIL EDKWFAYDEK EEKAVDRHIS SVRNLSRRIH GRFVKQESHF GHGVGCDSGE  1020
ELTSSNCSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-4815526113118DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1519526QKKRRLKK
2520525KKRRLK
3861872KRKGKDLKKKLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413644.10.0PREDICTED: uncharacterized protein LOC103994907 isoform X1
TrEMBLM0TRH90.0M0TRH9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P18260_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-100related to ABI3/VP1 2