PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P18270_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family G2-like
Protein Properties Length: 371aa    MW: 40346 Da    PI: 8.7654
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P18270_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.26.9e-32193248156
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                            k+r++W+peLH+rF++a+++LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  GSMUA_Achr8P18270_001 193 KARRCWSPELHRRFLHALQRLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 248
                            68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.761190250IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-28191251IPR009057Homeodomain-like
SuperFamilySSF466891.05E-17191251IPR009057Homeodomain-like
TIGRFAMsTIGR015577.2E-27193248IPR006447Myb domain, plants
PfamPF002491.8E-7195246IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDLLGRARRY HDYIRALKEE RKKIEVFQRE LPLCLQLVTQ AIESVRHRAG EEEGVYEGPV  60
LEEFIPLKPS PTSTLSEEEK GETRKSAAAI GWDRKPEWLR SVQLWNQEPD TDLKEPPKKP  120
IAVSLKKIGG AFQPFDREKH VAPPAVVAVA PPASSTAGGG DGKGGGGGCA DVDGSRSGGR  180
DKEKEGQSQP HRKARRCWSP ELHRRFLHAL QRLGGSHVAT PKQIRELMKV DGLTNDEVKS  240
HLQKYRLHTR RPTPTVQSSS SSTSSPPATQ FVLVGGILVS PPDYAAASPG NGAYAPPDSI  300
YAPLASVPSD SKLRNQQLHQ QSQRSIARPS DTEDRSGGED DNSMRDDGDA TNSASPTTSA  360
TSQTTTASPL F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-14193246255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-14193246255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-14193246255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-14193246255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-14193246255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-14193246255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-14193246255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-14193246255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate. {ECO:0000269|PubMed:23324170}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6205611e-173JX620561.1 Gossypium hirsutum clone NBRI_GE66829 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413646.10.0PREDICTED: myb family transcription factor EFM-like
SwissprotQ6Z8692e-84NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBLM0TRI00.0M0TRI0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P18270_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64703754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.12e-78G2-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sawaki N, et al.
    A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice.
    Plant Cell Physiol., 2013. 54(4): p. 506-17
    [PMID:23324170]