PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P20020_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 192aa    MW: 21264.6 Da    PI: 9.3931
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P20020_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-101261553
                           HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS
                    HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53
                            + +E++RR +++  +++L +llP+ +s++ ++ ++ a+ L +A++YIk 
  GSMUA_Achr8P20020_001 12 RKTIEKNRRIHMKALYSKLLSLLPTpSSQQEGGAVTLADRLNEAINYIKG 61
                           5789*********************555888888**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.902762IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-9977IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-91277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00151368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-71361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.04E-51567No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
METSHGLTRP DRKTIEKNRR IHMKALYSKL LSLLPTPSSQ QEGGAVTLAD RLNEAINYIK  60
GKQEMLERMQ KRKRQLTGSA GTASEVATAS RSPKIDVQDL RPGLRVIAVI SPCDHHLIFC  120
EIVRVLGAEG VDIITASYAV VGDRAFHTIQ FLAPKSGTGE ADQKGGGFYL YTKLYMLKDF  180
VSLCIESPFL QE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413847.21e-117PREDICTED: transcription factor bHLH36-like isoform X1
TrEMBLM0TS051e-140M0TS05_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P20020_0011e-141(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119872938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.16e-21bHLH family protein