PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P20660_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

WRKY

Protein Properties

Length: 253aa MW: 27673.5 Da PI: 10.3111

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P20660_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101.2	5.9e-32	187	244	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYegeHnh GSMUA_Achr8P20660_001 187 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHA 244 9**********************9988**************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	9.4E-18	138	183	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	3.3E-34	173	244	IPR003657	WRKY domain
PROSITE profile	PS50811	29.998	180	243	IPR003657	WRKY domain
SuperFamily	SSF118290	2.09E-27	183	244	IPR003657	WRKY domain
SMART	SM00774	4.3E-39	185	245	IPR003657	WRKY domain
Pfam	PF03106	9.9E-28	187	243	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MEEVEKANRA AVDSCHRVLS LLSQAQDQVQ SGNLLAGTGD AVSRFKRVVS LLSNSAGHGR 60 VRIASKIQIL DSSSGNPLPI NRRSFLENQF GLQASSSSQS FVSSLSMDGS MASLDGKPFH 120 LIGGPASSDP INLHPPPKRR CVCRGEDGNG KCATTGRCHC SKRRKLRVKR SIKVPAISNK 180 LADIPPDEYS WRKYGQKPIK GSPHPRGYYK CSSMRGCPAR KHVERCLEDP SMLIVTYEGE 240 HNHARLLTHS SQT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-21	178	243	7	71	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009413919.1	1e-170	PREDICTED: probable WRKY transcription factor 21
Refseq	XP_009413922.1	1e-170	PREDICTED: probable WRKY transcription factor 21
Refseq	XP_009413923.1	1e-170	PREDICTED: probable WRKY transcription factor 21
Refseq	XP_018685280.1	1e-170	PREDICTED: probable WRKY transcription factor 21
Swissprot	Q93WU6	1e-73	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	M0TS69	0.0	M0TS69_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P20660_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2859	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28650.1	2e-70	WRKY DNA-binding protein 74

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]