PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P21030_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family AP2
Protein Properties Length: 502aa    MW: 55372.8 Da    PI: 5.8964
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P21030_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.45.6e-16164213155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV++++++grW+++I+d      + k+++lg f ta  Aa+a+++a+ k++g
  GSMUA_Achr8P21030_001 164 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFNTAHVAARAYDRAAIKFRG 213
                            78*******************......55************************997 PP
2AP243.39.3e-14256306155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV+ +k  grW+A+       g    +k+++lg f+++eeAa a+++a++k +g
  GSMUA_Achr8P21030_001 256 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEEEAAMAYDKAALKCNG 306
                            89********.7******...5...334336**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.75E-15164222IPR016177DNA-binding domain
PfamPF008472.9E-8164213IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-16165222IPR001471AP2/ERF domain
CDDcd000187.18E-23165223No hitNo description
SMARTSM003801.3E-30165227IPR001471AP2/ERF domain
PROSITE profilePS5103217.187165221IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-17256315IPR016177DNA-binding domain
PfamPF008471.3E-9256306IPR001471AP2/ERF domain
CDDcd000187.59E-27256316No hitNo description
Gene3DG3DSA:3.30.730.103.2E-16257314IPR001471AP2/ERF domain
SMARTSM003802.4E-33257320IPR001471AP2/ERF domain
PROSITE profilePS5103215.975257314IPR001471AP2/ERF domain
PRINTSPR003675.2E-6258269IPR001471AP2/ERF domain
PRINTSPR003675.2E-6296316IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MLDLNVASSG ESTAVEEETI GRGTGGGGLA IGSDTSESSV LNAEASADAA ADENSCSTRP  60
VTAPAIEFGI LRSSASEEGE NDVDEENEEV RNVVSQEPAL ITRQLFPPEP PLEPFPAASS  120
SPSSSKLQWM DPSFYQADIA PQATQQQQQQ QVKKSRRGPR SRSSQYRGVT FYRRTGRWES  180
HIWDCGKQVY LGGFNTAHVA ARAYDRAAIK FRGIDADINF NLSDYEEDMK QMKNLTKEEF  240
VHILRRQSTG FSRGSSKYRG VTLHKCGRWE ARMGQLLGKK YIYLGLFDSE EEAAMAYDKA  300
ALKCNGREAV TNFDPSSYEG HLSTEADSEG QSVDLNLKIS QPDVHSPKRD QNPPEILYSY  360
SPSEASATKR VQISSPPLQP TSTPYHMDML PDKSHAWTAQ NPPFYSTTEE RDRKKRPMVG  420
LEALPNWTWQ MHGSTPLPLF SCAASSGFPT AIITAAIPPP KPPASTSSPF PSTIKLLCLT  480
TCRFFYMCKS CSLKISISIQ MD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2260520.0AC226052.1 Musa balbisiana clone BAC MBP-64B17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009414295.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
RefseqXP_009414296.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
SwissprotB8AXC31e-125AP21_ORYSI; APETALA2-like protein 1
TrEMBLM0TSA60.0M0TSA6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P21030_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-100related to AP2.7