PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P21100_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 204aa    MW: 24011.3 Da    PI: 5.4831
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P21100_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix766e-2426107186
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                            +Wt++e+++L+++r ++++++ ++k++kplWe+ s+ ++++gf r+p qCk+kw+nl +r+k i+  e++      +++p++++++
  GSMUA_Achr8P21100_001  26 QWTHDETRELLAIRAQLDRSFTETKRNKPLWEATSSMLQQKGFFRTPDQCKSKWKNLVTRFKGIESAEGEI----GKQFPFYEEMR 107
                            7********************************************************************96....5679*****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00192385IPR001005SANT/Myb domain
CDDcd122032.82E-232590No hitNo description
Gene3DG3DSA:1.10.10.604.1E-42684IPR009057Homeodomain-like
PfamPF138372.0E-2026109No hitNo description
PROSITE profilePS500907.6772783IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MDLHRQRLNP YAQVNPPPES VERFPQWTHD ETRELLAIRA QLDRSFTETK RNKPLWEATS  60
SMLQQKGFFR TPDQCKSKWK NLVTRFKGIE SAEGEIGKQF PFYEEMRRIF ADRMERLLVF  120
EKDKGKGVQV RVKEWEEEAE EEEEEEEEEG KAEESLSSFC RCFAYHQGLV SVAPAKVTEA  180
CKCFFWLLPL CHLLFRLSLA SSPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A2e-1522105286DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018686435.11e-109PREDICTED: trihelix transcription factor GT-3b-like
SwissprotO804502e-35TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLM0TSB31e-148M0TSB3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P21100_0011e-149(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125953134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.12e-37Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]