PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P22120_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 240aa MW: 28001.3 Da PI: 8.0213

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P22120_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.3	1e-11	54	109	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C....TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.as.kapskKlsKaeiLekAveYIksLq 55 + hn+ Er RR+++N+ ++ Lr+llP+ + + ++kKls i+ ++ +Y+ +Lq GSMUA_Achr8P22120_001 54 KLCHNAYERDRRKKLNDLYSSLRDLLPEsDQaRKKKKKLSIPLIVCRVLKYVPELQ 109 678*************************8765666666999999999999988887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.09E-13	49	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.52E-7	50	113	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.6E-11	51	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.008	52	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.8E-9	54	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-6	58	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MGWQPEDITA HVLHYEDPFA CYPYMEELEI GHDDLLRHCS VLAAKDDSSS STKKLCHNAY 60 ERDRRKKLND LYSSLRDLLP ESDQARKKKK KLSIPLIVCR VLKYVPELQR QVERLSRRKE 120 EILLALSRPE EQSHCVRSAV QYPMVSATCL SKREVMVQLC VVNKDATFSF SKILKVLERE 180 GLHLMNSSNY TTCDGRCVCS LHLQAREDFR SECRIFCEHL MEEIKEQARH GSNLPRSLWM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009414172.2	1e-177	PREDICTED: transcription factor bHLH101
TrEMBL	M0TSL5	1e-176	M0TSL5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P22120_001	1e-177	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3280	34	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	4e-34	bHLH family protein