PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P23350_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 155aa    MW: 17342.8 Da    PI: 9.3153
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P23350_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.8e-0982123955
                            HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             r RR+ri +++  L++++P       +K++ a++L +Av+Y+k Lq
  GSMUA_Achr8P23350_001  82 ARLRRERISERIRVLQRMVPGG-----TKMDTASMLDEAVRYVKFLQ 123
                            699*****************87.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.49773122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-1474132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-1577131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-1379128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-683123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.88E-695127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MLQLAETDQV STDPLQEYLP TPTFAAPQTP TNLSGNGDLS LVREMRFQIA AMQPIDIDPE  60
SARPPRKRRN VRVSKDPQSV AARLRRERIS ERIRVLQRMV PGGTKMDTAS MLDEAVRYVK  120
FLQTQVQSLE RAAAAGAVPA HGNCCSCFRD TYQLQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16272RPPRKRRNVRV
28287RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009414344.11e-111PREDICTED: transcription factor HEC2-like
SwissprotQ9SND41e-40HEC2_ARATH; Transcription factor HEC2
TrEMBLM0TSY81e-109M0TSY8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P23350_0011e-110(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.11e-38bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]