PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P23820_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 527aa    MW: 57777.4 Da    PI: 9.2508
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P23820_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.33e-40238314278
                            -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                    SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                            CqvegC+ dl++ak+yhr+h+vC  hsk+p+v+v+g+e+rfCqqCsrfh lsefD++krsCrrrL++hn rrrk+q+
  GSMUA_Achr8P23820_001 238 CQVEGCNIDLTTAKDYHRKHRVCVNHSKSPKVIVAGQERRFCQQCSRFHGLSEFDQNKRSCRRRLSDHNVRRRKPQP 314
                            **************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.9E-32231299IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.47235312IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.7E-37236316IPR004333Transcription factor, SBP-box
PfamPF031108.8E-31238311IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MYFVVRILFG NFSVAETSVF GCCHGQKALI WWDCGQKRGK INKNQAVHTS PLISRFWFVS  60
RCTSAATDGE VERPCVKGNS SGTFSSSTPS TLDHPRVGIR SGARICNGSV CSSSGGASSV  120
LELGNRSSKS SISASIDSLS ETGKRKSQFN FDSTERAPYN LNKNIFARVE GSGTSPASVT  180
AGYSREPLTG LKLGRTSFED GGAGNNIENL SSSASITSSI ALVKKSRVSQ QTFQNFYCQV  240
EGCNIDLTTA KDYHRKHRVC VNHSKSPKVI VAGQERRFCQ QCSRFHGLSE FDQNKRSCRR  300
RLSDHNVRRR KPQPMTISFS SPRISSSDHD DGHQMNLVFG RAPPCNVPAT VSSPWDDLGS  360
FKLIQPKESW TKSNKAGGST GLLQFSSTCQ THDITPFHHD LDPLSPLKGI TTEVLNHNLE  420
ASVFASNLDV PPDLHSALSL LSTNSWNPVN PGTSSTKYVN TKNAFTTHPE VNMIDATTGL  480
LQDEQPLAQP LTTTQPFHLQ NDNGQFQEFQ QLKAPFRASS FDSTRRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-242383111184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413976.10.0PREDICTED: squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_009413977.10.0PREDICTED: squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_018685129.10.0PREDICTED: squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_018685130.10.0PREDICTED: squamosa promoter-binding-like protein 12 isoform X1
SwissprotA2YGR51e-86SPL12_ORYSI; Squamosa promoter-binding-like protein 12
TrEMBLM0TT350.0M0TT35_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P23820_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.31e-46squamosa promoter binding protein-like 2