PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P23890_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HB-PHD
Protein Properties Length: 666aa    MW: 75590.5 Da    PI: 8.8478
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P23890_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.38.3e-114955371153
                            HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
               Homeobox  11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                             +e L  +F++n  ps++++e L+k+lg++ ++V+ WF+N R+
  GSMUA_Achr8P23890_001 495 AVEKLRLAFAENELPSRSAKENLSKQLGISSEKVSKWFKNARY 537
                            5789999***********************************7 PP
2PHD39.11.7e-13222275151
                            SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSSTBSSHHHHTT CS
                    PHD   1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpegewlCeeCkek 51 
                            +C+ C+++++  +++++lCd +C++ fH+kCl+++le+ +  ++ wlC+ C++k
  GSMUA_Achr8P23890_001 222 FCAKCRSTEAfpDNDIILCDgTCNSGFHQKCLDPPLEKIPPGDQAWLCKFCTCK 275
                            699****55455********56***************8888888*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579035.09E-15214277IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.0E-13219275IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.834220275IPR019787Zinc finger, PHD-finger
SMARTSM002494.0E-9222273IPR001965Zinc finger, PHD-type
CDDcd155044.80E-25222272No hitNo description
PfamPF006286.3E-11222275IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590223272IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007111.774482542IPR001356Homeobox domain
SMARTSM003891.2E-8484546IPR001356Homeobox domain
SuperFamilySSF466897.7E-10485550IPR009057Homeodomain-like
CDDcd000869.73E-8490546No hitNo description
Gene3DG3DSA:1.10.10.603.1E-11490555IPR009057Homeodomain-like
PfamPF000463.0E-8495537IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MKTSRKKLIC YTPKKSSLLG KELHSKLDSE SAKKNLRKVS YSRRCRLKPN TFMKKRGIRR  60
RNFLNGKPVK TMQKISHHTS VNGQCLSRLS TNGSSCLCSK GNPGTSDDNG TIKLHRRRRR  120
KRKKKTVERD EASCLQRRTR YLLIKIKLEQ NLIDAYSGDG WNGQSREKIK PEKELLRAQK  180
QIVKCKIGIR DAIRKLDSLS CVGSIADSLM HPDGSVFHEH IFCAKCRSTE AFPDNDIILC  240
DGTCNSGFHQ KCLDPPLEKI PPGDQAWLCK FCTCKFEILE AINAHLGTCF SVNSNWEDIF  300
KEATACSDVE NTGLNHAEVW PSEDSEDEDY NPETNENSNS RSGIEENMSN DSSSSSLFSS  360
SDGTISYSDS EHYSYLEKPF NIISRSKNRV DLFDSVGNYD SGPSNECAIT SYRRQRRDVD  420
YKKLHDEMFG KEPPENVAQS EDEDWGPNRR KRRKMEETTG TCMANPVNED GSSNLALTEK  480
ISCDKKQLFR IPPVAVEKLR LAFAENELPS RSAKENLSKQ LGISSEKVSK WFKNARYAAL  540
RMRKNETTNA VKNQDTSISM NESLSEDLGP PGCRVGKSFR EVSGRRRLVL ERTFNKGGTG  600
CQLDEKTDSE QLYLTEVERL CRLEDKLQSL KKTLLSCMDE DKLTTKTCVR EETVIYVPVA  660
EVKEKA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116122RRRRKRK
2116124RRRRKRKKK
3118124RRKRKKK
4119123RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF5825600.0KF582560.1 Musa acuminata AAA Group cultivar Cavendish pathogenesis-related protein 1 (PR1-2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413966.10.0PREDICTED: pathogenesis-related homeodomain protein isoform X1
RefseqXP_009413967.10.0PREDICTED: pathogenesis-related homeodomain protein isoform X1
TrEMBLM0TT420.0M0TT42_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P23890_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85502227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.11e-84pathogenesis related homeodomain protein A