PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P23980_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 227aa    MW: 25671.8 Da    PI: 4.5859
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P23980_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.67.9e-124389354
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                           r+h e+ErrRR+ri+s +++Lr++l  +     +K +Ka+ L k+ve +k+L
  GSMUA_Achr8P23980_001 43 RNHREAERRRRERIKSHLDRLRSILACD-----PKTDKASLLAKVVERMKDL 89
                           78*************************8.....7**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.02E-114095IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.2654089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-94389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-114498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-94695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2600.001127175No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MSNGLPAYFV SSFYPHMEME MEMEMSGDAI DATPMDRALA ASRNHREAER RRRERIKSHL  60
DRLRSILACD PKTDKASLLA KVVERMKDLK QRTEEIADTQ FFPTETDEIV VLPSSAPISG  120
QRSTFEASLC CEDRSDLLPE LIETLRSLHL KTLRAEIATL GGRVRNVLIL AKDEEAYEDA  180
DDDDDDDDDD DGDSGGAFLR DALKALVDRS LPAERCKRRR LVDRNPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14853ERRRRE
2216220KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413957.11e-162PREDICTED: transcription factor bHLH106-like
SwissprotO806745e-51BH106_ARATH; Transcription factor bHLH106
TrEMBLM0TT511e-161M0TT51_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P23980_0011e-162(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95783039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.16e-43bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]