PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P24420_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 238aa    MW: 25716.7 Da    PI: 5.7899
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P24420_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157e-057594221
                           EETTTTEEESSHHHHHHHHH CS
                zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                           +Cp CgksF++  +L  H+r
  GSMUA_Achr8P24420_001 75 TCPECGKSFPSDKSLFGHLR 94
                           6*****************98 PP
2zf-C2H214.97.5e-05152174123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            y+C+ C+k+Fs++  L  H  +H
  GSMUA_Achr8P24420_001 152 YRCSVCSKTFSSHQALGGHRASH 174
                            9***************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.88E-97496No hitNo description
PROSITE profilePS5015710.47174101IPR007087Zinc finger, C2H2
SMARTSM003550.00857496IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.4E-47596IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.5E-87698IPR007087Zinc finger, C2H2
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
SuperFamilySSF576671.88E-9147174No hitNo description
PfamPF139121.5E-10151176IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.094152179IPR007087Zinc finger, C2H2
SMARTSM003550.0069152174IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280154174IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGARLVEGGS YCDTEDAALG ADNSLGNRVE CAEEPGKAVA QEVASSRCGD DEESVSEAGA  60
AAAEDDGSSR RRHATCPECG KSFPSDKSLF GHLRCHPERD YRGVNPPPEA RRKSGASPAA  120
KRPSAKRGRQ RKATEQVVLA NEPGTSDRGR RYRCSVCSKT FSSHQALGGH RASHNKIRSH  180
HHPEEEEEKE EEQEEAAAAT TTSNHKREQQ EAEADKGGSH GLLDFDLNEA PRLGEEES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415721.11e-141PREDICTED: zinc finger protein ZAT2-like
TrEMBLM0TT951e-170M0TT95_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P24420_0011e-171(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116122130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.12e-24C2H2-like zinc finger protein