PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P24490_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 414aa MW: 44954.9 Da PI: 6.3481

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P24490_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30	9.5e-10	259	307	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + sk Ka +L + ++Y++sLq GSMUA_Achr8P24490_001 259 NSHSLAERVRREKISQRMKLLQELVPGC----SKVTGKAVMLDEIINYVQSLQ 307 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.26E-11	254	311	No hit	No description
SuperFamily	SSF47459	8.64E-17	254	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.332	256	306	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-16	257	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.1E-7	259	307	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.9E-11	262	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MDMNERDECS SEKNEHHLTY SNAGFSSGWQ FRNPSVGIVP GDQRGSMEDS FNPSLWKLCE 60 SDMPAIAKPV PATSRFDDGW TPSDSSSRGG TFLPSGPPIL TPTLSHFPAD SAFIKRAARF 120 SCFSAASLGS MATPFGASHL AGAQIHNIDI NMAKDASLHD VEPGEAAVPS GVGGGHENAD 180 SSSKDLAAKK RRRSSEELEA ERGDPQMAAE AKTESVDTDH KAEQSSSTAK PNGKHDKDAS 240 EAPKEDYIHV RARRGQATNS HSLAERVRRE KISQRMKLLQ ELVPGCSKVT GKAVMLDEII 300 NYVQSLQQQV EFLSMKLAAV NPRLDFNIES LLSKDFLQSH GGTSSAIGFS PDAVHPQMHL 360 SQQGLVQAEI SGNLNHPNAF RRAVNSMPNA WDEQLQNVMQ MAAFSSNSQQ PRTQ

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MDMNERDECS SEKNEHHLTY SNAGFSSGWQ FRNPSVGIVP GDQRGSMEDS FNPSLWKLCE  60
SDMPAIAKPV PATSRFDDGW TPSDSSSRGG TFLPSGPPIL TPTLSHFPAD SAFIKRAARF  120
SCFSAASLGS MATPFGASHL AGAQIHNIDI NMAKDASLHD VEPGEAAVPS GVGGGHENAD  180
SSSKDLAAKK RRRSSEELEA ERGDPQMAAE AKTESVDTDH KAEQSSSTAK PNGKHDKDAS  240
EAPKEDYIHV RARRGQATNS HSLAERVRRE KISQRMKLLQ ELVPGCSKVT GKAVMLDEII  300
NYVQSLQQQV EFLSMKLAAV NPRLDFNIES LLSKDFLQSH GGTSSAIGFS PDAVHPQMHL  360
SQQGLVQAEI SGNLNHPNAF RRAVNSMPNA WDEQLQNVMQ MAAFSSNSQQ PRTQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009415543.1	0.0	PREDICTED: transcription factor bHLH49-like
TrEMBL	M0TTA2	0.0	M0TTA2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P24490_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2909	37	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	2e-64	bHLH family protein