PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P24970_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 348aa    MW: 38290.9 Da    PI: 6.325
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P24970_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.78.7e-08262302954
                            HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             r+RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  GSMUA_Achr8P24970_001 262 ARQRRERISEKLRVLQRLVPGG-----SKMDTASMLDEAANYVKFL 302
                            69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.053253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.64E-10259306No hitNo description
SuperFamilySSF474595.23E-13259311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-12259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-12261316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-5262302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDNLSWENPV AIRTKVSLWS NHHDNITDSS EGYNTSFKEK LELNEALLSS SLELQRILAA  60
LQTSSSLDRI SERVEISTPS LGLGLLQNPA DSVLLRPVVG ATLWEAASSP PIGASEELHV  120
ISNTFDAQDD LSAIFSSCKN GNGSLDSHQA SVTSHCSSRK PSSKRKFDEF TRIGENYHIR  180
SLLESNSSSK EGGFQISFTR GQKLGFVQEG DYEIDNEAIA QVKEMIYRAA ALRPVSLVAE  240
EAVEKPKRKN VRISSDPQTV AARQRRERIS EKLRVLQRLV PGGSKMDTAS MLDEAANYVK  300
FLKSQVMALE AMDNSWYDSV SSTTAARTLS TASEPGFSHA TFLLHPKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262267RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415713.10.0PREDICTED: transcription factor HEC3-like
TrEMBLM0TTF00.0M0TTF0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P24970_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.16e-47bHLH family protein