PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P25110_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 222aa    MW: 25274.7 Da    PI: 7.922
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P25110_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.22.8e-2270131359
                            -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S..SSTTEEEEEEES--SS- CS
                   WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa..edpkvveitYegeHnhe 59 
                            Dgy+WrKYGqK+++++++prsYYrCt++   gC +kk v++++   dp  +++ Y+ +H+++
  GSMUA_Achr8P25110_001  70 DGYQWRKYGQKTINNAKYPRSYYRCTYKegqGCLAKKTVQQEDscADPPSFKVEYSIQHTCK 131
                            9**************************99999*******9865226**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-2357132IPR003657WRKY domain
SuperFamilySSF1182909.42E-2261132IPR003657WRKY domain
SMARTSM007742.3E-2968132IPR003657WRKY domain
PfamPF031066.6E-2470131IPR003657WRKY domain
PROSITE profilePS5081117.78770133IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MMKMTRVYIL KLGYIGRGGE KRLSRNPHLK DIQVRCDSKS RRSNGISCDR TCCRRKQETW  60
SIVTSVPYGD GYQWRKYGQK TINNAKYPRS YYRCTYKEGQ GCLAKKTVQQ EDSCADPPSF  120
KVEYSIQHTC KTIDAVVPFV MDSTPKEALI HTGGFSSEQH LSLSSDTGGN LIQDESLWIY  180
DQMQECPPLV PELLGKMDMA SSILSPTGPW DWDMLMGDDD GW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-15701311069OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415473.11e-124PREDICTED: probable WRKY transcription factor 70
TrEMBLM0TTG41e-165M0TTG4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P25110_0011e-166(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-18WRKY DNA-binding protein 70